BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0337500 Os09g0337500|AK102339
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0337500 Conserved hypothetical protein 383 e-107
Os02g0545300 Conserved hypothetical protein 300 3e-82
Os07g0218000 70 1e-12
>Os09g0337500 Conserved hypothetical protein
Length = 184
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MSSKSNRDLILSFFFPSRFNKVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGN 60
MSSKSNRDLILSFFFPSRFNKVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGN
Sbjct: 1 MSSKSNRDLILSFFFPSRFNKVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGN 60
Query: 61 TGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPL 120
TGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPL
Sbjct: 61 TGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPL 120
Query: 121 KVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNVRRHKLYKTYCTT 180
KVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNVRRHKLYKTYCTT
Sbjct: 121 KVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNVRRHKLYKTYCTT 180
Query: 181 KTVS 184
KTVS
Sbjct: 181 KTVS 184
>Os02g0545300 Conserved hypothetical protein
Length = 384
Score = 300 bits (768), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 141/147 (95%), Positives = 143/147 (97%)
Query: 35 METSDDAARQVITNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQ 94
METSDDA RQVI NTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQ
Sbjct: 1 METSDDATRQVIPNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQ 60
Query: 95 FGKVYGRHASVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMAD 154
FGKV GRH SVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFP+ISMAD
Sbjct: 61 FGKVCGRHTSVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPKISMAD 120
Query: 155 YQCVMTQVERKYNVRRHKLYKTYCTTK 181
YQCVMTQVER+YNVRRHKLYKTYCTTK
Sbjct: 121 YQCVMTQVERQYNVRRHKLYKTYCTTK 147
>Os07g0218000
Length = 267
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/30 (96%), Positives = 30/30 (100%)
Query: 152 MADYQCVMTQVERKYNVRRHKLYKTYCTTK 181
MADYQCVMTQVER+YNVRRHKLYKTYCTTK
Sbjct: 1 MADYQCVMTQVERQYNVRRHKLYKTYCTTK 30
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,706,024
Number of extensions: 209930
Number of successful extensions: 511
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 3
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)