BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0315800 Os09g0315800|AK121947
         (469 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0315800  Conserved hypothetical protein                      765   0.0  
Os05g0581100  Conserved hypothetical protein                       69   7e-12

>Os09g0315800 Conserved hypothetical protein
          Length = 469

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/469 (82%), Positives = 388/469 (82%)

Query: 1   MARRGXXXXXXXXXXXXXXXXXXXXXGAGEREGWLDDXXXXXXXXXXXXXXXXXXXXXXX 60
           MARRG                     GAGEREGWLDD                       
Sbjct: 1   MARRGHHHHLAEVALLASASEDLAAVGAGEREGWLDDPAVLPSLAPRARALAVASAARSV 60

Query: 61  XXXXXXXXXXXXXXXRPALGPDDGRISAVEWVPLXXXXXXXXXXXXXXXXXXXXXXWLLF 120
                          RPALGPDDGRISAVEWVPL                      WLLF
Sbjct: 61  LAVVPVAGVGGGVTVRPALGPDDGRISAVEWVPLVGEDAEEAGGEGVAVAVGTDAGWLLF 120

Query: 121 YSLAGDLLHKQSIYPSKILKLNFRERKENAWEDSGSDELSVVFPGVIARFDGADLQNMLQ 180
           YSLAGDLLHKQSIYPSKILKLNFRERKENAWEDSGSDELSVVFPGVIARFDGADLQNMLQ
Sbjct: 121 YSLAGDLLHKQSIYPSKILKLNFRERKENAWEDSGSDELSVVFPGVIARFDGADLQNMLQ 180

Query: 181 KSLHEVKSHLWKDKSEQEDAEEDSSFGRIPFQIWNVSKFSSCADAAIVGLMPPPLLELQS 240
           KSLHEVKSHLWKDKSEQEDAEEDSSFGRIPFQIWNVSKFSSCADAAIVGLMPPPLLELQS
Sbjct: 181 KSLHEVKSHLWKDKSEQEDAEEDSSFGRIPFQIWNVSKFSSCADAAIVGLMPPPLLELQS 240

Query: 241 SQRHYCAITVGEDAVVSAYRLSEDRSRSIVGAILSRGVAATFSTISSLSKIIWRSEPSPT 300
           SQRHYCAITVGEDAVVSAYRLSEDRSRSIVGAILSRGVAATFSTISSLSKIIWRSEPSPT
Sbjct: 241 SQRHYCAITVGEDAVVSAYRLSEDRSRSIVGAILSRGVAATFSTISSLSKIIWRSEPSPT 300

Query: 301 KKSRPKPQSFAKTSPLTCLKDSPRKGERLTLSPSGTLAAITDSLGRILLLDTHALVAVRL 360
           KKSRPKPQSFAKTSPLTCLKDSPRKGERLTLSPSGTLAAITDSLGRILLLDTHALVAVRL
Sbjct: 301 KKSRPKPQSFAKTSPLTCLKDSPRKGERLTLSPSGTLAAITDSLGRILLLDTHALVAVRL 360

Query: 361 WKGYRDASCLFVEMLLNKDKASSSLHTEYTKSDYCLCLAIHAPRKGIIEIWQMRTGARLL 420
           WKGYRDASCLFVEMLLNKDKASSSLHTEYTKSDYCLCLAIHAPRKGIIEIWQMRTGARLL
Sbjct: 361 WKGYRDASCLFVEMLLNKDKASSSLHTEYTKSDYCLCLAIHAPRKGIIEIWQMRTGARLL 420

Query: 421 TIPCPKGSRILQPSTRFMSSPFSSLYSPLEVYLFNGDSGQLSVLNRHIG 469
           TIPCPKGSRILQPSTRFMSSPFSSLYSPLEVYLFNGDSGQLSVLNRHIG
Sbjct: 421 TIPCPKGSRILQPSTRFMSSPFSSLYSPLEVYLFNGDSGQLSVLNRHIG 469



>Os05g0581100 Conserved hypothetical protein
          Length = 333

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 27  GAGEREGWLDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPALGPDDGRI 86
           G GEREGWLDD                                      RPALGPDDGRI
Sbjct: 24  GPGEREGWLDDPAVLPPLAPRARALAVAVAARSVLAVAPVAGGGGRVTVRPALGPDDGRI 83

Query: 87  SAVEWVPLXXXXXXXXXXXXXXXXXXXXXXWLLFYSLAGDLLHKQS 132
           SAVEW+PL                      WLL YSLAGDLLHKQ+
Sbjct: 84  SAVEWIPL-AGEDAGEAGERVAVAVGTDARWLLLYSLAGDLLHKQT 128



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,239,425
Number of extensions: 570722
Number of successful extensions: 1774
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1770
Number of HSP's successfully gapped: 2
Length of query: 469
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 365
Effective length of database: 11,605,545
Effective search space: 4236023925
Effective search space used: 4236023925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)