BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0314300 Os09g0314300|AK101689
         (380 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0314300  Peroxin-3 family protein                            672   0.0  

>Os09g0314300 Peroxin-3 family protein
          Length = 380

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/380 (87%), Positives = 333/380 (87%)

Query: 1   MLASARGFWGRHRRKILVSLGVXXXXXXXXRYLDSHRRQXXXXXXXXXXXXXXXXIIKNQ 60
           MLASARGFWGRHRRKILVSLGV        RYLDSHRRQ                IIKNQ
Sbjct: 1   MLASARGFWGRHRRKILVSLGVAGAGYAAYRYLDSHRRQLVRVEQRALEERAAEEIIKNQ 60

Query: 61  LQTHFENVQKISDTTTLPFAMHYLRSRIMEELDISHLTEKLMHGKGESSAPALTPKEKYD 120
           LQTHFENVQKISDTTTLPFAMHYLRSRIMEELDISHLTEKLMHGKGESSAPALTPKEKYD
Sbjct: 61  LQTHFENVQKISDTTTLPFAMHYLRSRIMEELDISHLTEKLMHGKGESSAPALTPKEKYD 120

Query: 121 TWEKIKILSFTRTVSSIWAMTLLSLYVRVQVTILGRHLYLDFARVTDGAQLQEGSDTFSK 180
           TWEKIKILSFTRTVSSIWAMTLLSLYVRVQVTILGRHLYLDFARVTDGAQLQEGSDTFSK
Sbjct: 121 TWEKIKILSFTRTVSSIWAMTLLSLYVRVQVTILGRHLYLDFARVTDGAQLQEGSDTFSK 180

Query: 181 SGHKDFLATADYLATYGINALITKMQHAATEILKEKQLKDPMGIDEVLETILQILKQFMG 240
           SGHKDFLATADYLATYGINALITKMQHAATEILKEKQLKDPMGIDEVLETILQILKQFMG
Sbjct: 181 SGHKDFLATADYLATYGINALITKMQHAATEILKEKQLKDPMGIDEVLETILQILKQFMG 240

Query: 241 LCEDNSWINYLVPENANVYAQLMAVSSSGFDDSSLLKDVRKLDQLMSETRIVLSSDDFRN 300
           LCEDNSWINYLVPENANVYAQLMAVSSSGFDDSSLLKDVRKLDQLMSETRIVLSSDDFRN
Sbjct: 241 LCEDNSWINYLVPENANVYAQLMAVSSSGFDDSSLLKDVRKLDQLMSETRIVLSSDDFRN 300

Query: 301 IMDRSLKKIASVVVEDLAVXXXXXXXXXXXXXXXXXXXXXXXSLPLLEEPDKNKHIQIIR 360
           IMDRSLKKIASVVVEDLAV                       SLPLLEEPDKNKHIQIIR
Sbjct: 301 IMDRSLKKIASVVVEDLAVQIGAPIPPPGLPLAKLLAKVAQLSLPLLEEPDKNKHIQIIR 360

Query: 361 SMPEVELFYTFLYANMPPET 380
           SMPEVELFYTFLYANMPPET
Sbjct: 361 SMPEVELFYTFLYANMPPET 380



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,253,650
Number of extensions: 343038
Number of successful extensions: 788
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)