BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0280800 Os09g0280800|Os09g0280800
(167 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0280800 336 4e-93
Os09g0430400 147 3e-36
Os08g0289800 127 3e-30
>Os09g0280800
Length = 167
Score = 336 bits (862), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MAGSQSSVHGENRDEPDAPVTWAKVQQMGKNLLQAMEWLLNARLPITGGGVVQPLLVDPV 60
MAGSQSSVHGENRDEPDAPVTWAKVQQMGKNLLQAMEWLLNARLPITGGGVVQPLLVDPV
Sbjct: 1 MAGSQSSVHGENRDEPDAPVTWAKVQQMGKNLLQAMEWLLNARLPITGGGVVQPLLVDPV 60
Query: 61 DEILDAHSADDADDELHGPLNGGGCHFLLEHEEEVLANEAFAPVHTLVVILNPMVLTMSR 120
DEILDAHSADDADDELHGPLNGGGCHFLLEHEEEVLANEAFAPVHTLVVILNPMVLTMSR
Sbjct: 61 DEILDAHSADDADDELHGPLNGGGCHFLLEHEEEVLANEAFAPVHTLVVILNPMVLTMSR 120
Query: 121 NIVIMMLFLQKIILSNGTPILAKVLSLTMEATIVVAKIMMTRIMLLG 167
NIVIMMLFLQKIILSNGTPILAKVLSLTMEATIVVAKIMMTRIMLLG
Sbjct: 121 NIVIMMLFLQKIILSNGTPILAKVLSLTMEATIVVAKIMMTRIMLLG 167
>Os09g0430400
Length = 322
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 102/167 (61%), Gaps = 14/167 (8%)
Query: 1 MAGSQSSVHGENRDEPDAPVTWAKVQQMGKNLLQAMEWLLNARLPITGGGVVQPLLVDPV 60
++ SQ SVHGEN DEPD+P+T A+VQQ+G NLLQAME LLNARLP GGG VQP DP
Sbjct: 74 LSASQPSVHGENHDEPDSPITRAEVQQIGNNLLQAMEHLLNARLPAAGGGAVQPPFGDPK 133
Query: 61 DEILDAHSADDADDELHGPLNGGGCHFLLEHEEEVLANEAFAPVHTLVVILNPMVLTMSR 120
D+I+DA SAD AD ELHGP NGGG F+ P+ R
Sbjct: 134 DDIVDAQSADVADSELHGPPNGGGRGFVA---------AGARGGGAHGRGHGPVAHFGGR 184
Query: 121 NIVIMMLFLQKIILSNGTPILAKVLSLTMEATIVVAKIMMTRIMLLG 167
+++I S+ P+LA+VLSL ME IVV I+MTRIMLLG
Sbjct: 185 -----FELHERMIWSSSMPVLAEVLSLVMENIIVVTMIVMTRIMLLG 226
>Os08g0289800
Length = 201
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 90/140 (64%), Gaps = 9/140 (6%)
Query: 1 MAGSQSSVHGENRDEPDAPVTWAKVQQMGKNLLQAMEWLLNARLPITGGGVVQPLLVDPV 60
MAGSQSS HGEN DEPDAP TWA+V QMG N+LQ ME LLNARLP GGVVQP LVDP
Sbjct: 1 MAGSQSSCHGENHDEPDAPATWAEVLQMGNNILQVMERLLNARLPAASGGVVQPPLVDPE 60
Query: 61 DEILDAHSA---DDADDELHGPLNGGGCHFLLEHEEEVLANEAFAPVHTLVVILNPMVLT 117
DE+ H D + P+ +LEHE+EVL E APV TL V+L+PM++T
Sbjct: 61 DELW-MHIRLMMMPMTDSMVRPMVE-----VLEHEKEVLTGEDLAPVRTLAVVLSPMIIT 114
Query: 118 MSRNIVIMMLFLQKIILSNG 137
M RN+ + + +L NG
Sbjct: 115 MRRNMRRHVHPRRGAVLGNG 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,822,353
Number of extensions: 253883
Number of successful extensions: 656
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)