Os09g0280800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0280800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.29 | 0.44 | 3.43 | -1.04 | 0.157 | 0.247 | -1.4 | -1.1 | -0.395 | 3.17 | 20 | 10 | -- | -- |
| 93.58 | 0.451 | 3.39 | -0.892 | 0.154 | 0.555 | -1.08 | -- | -0.333 | 3.49 | 18.4 | 6 | -- | -- |
| 94.68 | 0.453 | 3.41 | -0.941 | 0.166 | 0.293 | -- | -0.66 | -0.375 | 3.34 | 20.08 | 9 | -- | -- |
| 96.95 | 0.459 | 3.4 | -0.827 | 0.192 | 0.342 | -- | -- | -0.358 | 3.48 | 20.02 | 9 | -- | -- |
| 96.14 | 0.457 | 3.41 | -0.929 | -- | 0.246 | -- | -0.702 | -0.363 | -- | 20.03 | 9 | -- | -- |
| 98.55 | 0.465 | 3.39 | -0.754 | 0.127 | -- | -1.01 | -- | -0.295 | 4.1 | -- | -- | -- | -- |
| 101.39 | 0.472 | 3.39 | -0.743 | 0.125 | -- | -- | -- | -0.289 | 4.74 | -- | -- | -- | -- |
| 98.7 | 0.463 | 3.4 | -0.809 | -- | 0.284 | -- | -- | -0.336 | -- | 20.08 | 9 | -- | -- |
| 114.4 | 0.498 | 3.38 | -- | 0.18 | 0.216 | -- | -- | -0.241 | 4.48 | 20.1 | 9 | -- | -- |
| 102.21 | 0.472 | 3.39 | -0.738 | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
| 115.93 | 0.504 | 3.37 | -- | 0.111 | -- | -- | -- | -0.206 | 4.94 | -- | -- | -- | -- |
| 115.34 | 0.5 | 3.37 | -- | -- | 0.165 | -- | -- | -0.231 | -- | 20 | 10 | -- | -- |
| 116.59 | 0.504 | 3.37 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.31 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 3 | 84.61 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 6 | 84.79 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 7 | 85.00 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 8 | 85.03 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 13 | 85.14 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 16 | 85.18 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 18 | 85.22 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 22 | 85.24 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 65 | 85.60 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 11 |
| 80 | 85.69 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 8 |
| 270 | 86.53 | wind | 7 | 4320 | < th | dose independent | sin | 14 | NA |
| 289 | 86.59 | wind | 7 | 4320 | > th | dose independent | sin | 14 | NA |
| 325 | 86.73 | wind | 5 | 4320 | > th | dose dependent | sin | 14 | NA |
| 412 | 87.09 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 22 |
| 632 | 87.97 | wind | 9 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 655 | 88.06 | wind | 9 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 661 | 88.08 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 693 | 88.15 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 714 | 88.21 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 716 | 88.22 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 23 |
| 836 | 88.67 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 840 | 88.69 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 845 | 88.71 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 848 | 88.71 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 14 |
| 856 | 88.76 | wind | 3 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 861 | 88.78 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 874 | 88.82 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 876 | 88.83 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 879 | 88.83 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 886 | 88.85 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 21 |
| 896 | 88.88 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 903 | 88.89 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 23 |
| 917 | 88.93 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 918 | 88.93 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 18 |
| 921 | 88.94 | temperature | 15 | 14400 | < th | dose independent | sin | 3 | NA |
| 933 | 88.96 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 952 | 88.98 | temperature | 15 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 979 | 89.02 | temperature | 15 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 993 | 89.04 | temperature | 15 | 14400 | > th | dose independent | sin | 1 | NA |
| 999 | 89.04 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 13 |