BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0280600 Os09g0280600|AK070961
         (207 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0280600  Mnd1 family protein                                 323   6e-89

>Os09g0280600 Mnd1 family protein
          Length = 207

 Score =  323 bits (827), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 161/207 (77%), Positives = 161/207 (77%)

Query: 1   MSKKRGLSLEEKREQMLQIFYDSQDFYXXXXXXXXXXXXXVIXXXXXXXXXXXXXXXXXX 60
           MSKKRGLSLEEKREQMLQIFYDSQDFY             VI                  
Sbjct: 1   MSKKRGLSLEEKREQMLQIFYDSQDFYLLKELEKLGPKKGVISQSVKDVVQSLVDDDLVL 60

Query: 61  XXXIGTSVYFWSLPSCAGNQLRTTYXXXXXXXXXXXXRFIELVEQRENLKRGREDSDERE 120
              IGTSVYFWSLPSCAGNQLRTTY            RFIELVEQRENLKRGREDSDERE
Sbjct: 61  KDKIGTSVYFWSLPSCAGNQLRTTYSKLESDLSSSKKRFIELVEQRENLKRGREDSDERE 120

Query: 121 AALEELKAVEQHHKKLKEELAAYADSDPAALEAMNDAIEVAHAAANRWTDNIFTLQQWCS 180
           AALEELKAVEQHHKKLKEELAAYADSDPAALEAMNDAIEVAHAAANRWTDNIFTLQQWCS
Sbjct: 121 AALEELKAVEQHHKKLKEELAAYADSDPAALEAMNDAIEVAHAAANRWTDNIFTLQQWCS 180

Query: 181 TTFPQAKEQLEHMYREVGITEDFEYLQ 207
           TTFPQAKEQLEHMYREVGITEDFEYLQ
Sbjct: 181 TTFPQAKEQLEHMYREVGITEDFEYLQ 207



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,042,351
Number of extensions: 161759
Number of successful extensions: 910
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)