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Os09g0280600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mnd1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0171) R2 : 0.635
β1 : -1.42 (0.0628) R2dD : 0.427 R2D : 0.175
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.757 (0.0366) R2dN8 : 0.459 R2N8 : 0.207
σ : 0.322
deviance : 47.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.1 0.274 10.2 -2.04 0.21 -0.0211 0.204 2.96 -0.921 1.71 0.5468 8415 -- --
43.14 0.308 10.2 -1.44 0.0967 0.238 0.427 -- -0.76 7.96 20.91 20928 -- --
34.19 0.272 10.3 -2.02 0.204 -0.0519 -- 3.02 -0.923 1.67 0.3598 8288 -- --
42.98 0.307 10.2 -1.42 0.0724 0.356 -- -- -0.762 6.94 57.67 19759 -- --
36.64 0.282 10.3 -2 -- -0.203 -- 2.66 -0.934 -- 0.3637 8288 -- --
44.82 0.314 10.2 -1.43 0.203 -- -0.078 -- -0.762 1.39 -- -- -- --
44.84 0.314 10.2 -1.43 0.203 -- -- -- -0.761 1.53 -- -- -- --
41.75 0.301 10.2 -1.59 -- -0.352 -- -- -0.788 -- 7.307e-07 11399 -- --
96.44 0.46 10.1 -- 0.079 0.403 -- -- -0.604 9.51 57.67 19759 -- --
47.37 0.322 10.2 -1.42 -- -- -- -- -0.757 -- -- -- -- --
98.82 0.465 10.1 -- 0.178 -- -- -- -0.602 1.27 -- -- -- --
96.52 0.459 10.1 -- -- 0.311 -- -- -0.601 -- 50 9818 -- --
100.79 0.469 10.1 -- -- -- -- -- -0.599 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.94 humidity 90.0 14400 > th dose dependent rect. 13 16
3 32.97 humidity 90.0 14400 > th dose dependent rect. 16 13
8 33.02 humidity 90.0 14400 > th dose dependent rect. 19 15
21 33.09 humidity 90.0 14400 > th dose dependent rect. 20 18
25 33.11 humidity 90.0 14400 > th dose dependent sin 13 NA
49 33.18 humidity 90.0 14400 > th dose dependent rect. 3 7
55 33.19 humidity 90.0 14400 > th dose dependent rect. 2 9
64 33.21 radiation 1.0 4320 < th dose dependent rect. 6 4
71 33.22 humidity 90.0 14400 > th dose dependent rect. 2 12
85 33.25 radiation 1.0 4320 < th dose dependent rect. 6 9
91 33.26 humidity 90.0 14400 > th dose dependent sin 7 NA
125 33.34 radiation 1.0 4320 < th dose independent rect. 6 9
137 33.37 radiation 1.0 4320 > th dose independent rect. 6 9
141 33.37 humidity 90.0 14400 > th dose dependent rect. 24 22
209 33.51 humidity 90.0 14400 > th dose dependent no NA NA
233 33.60 precipitation 0.1 14400 > th dose independent rect. 6 5
234 33.60 precipitation 0.1 14400 > th dose dependent rect. 6 5
257 33.76 precipitation 0.1 14400 > th dose independent rect. 6 2
258 33.76 precipitation 0.1 14400 < th dose independent rect. 6 5
259 33.76 precipitation 0.1 14400 > th dose dependent rect. 6 2
260 33.76 precipitation 0.1 14400 < th dose dependent rect. 6 5
265 33.79 radiation 1.0 4320 < th dose independent rect. 6 4
275 33.82 precipitation 0.1 14400 > th dose independent rect. 5 8
278 33.84 radiation 1.0 4320 > th dose independent rect. 6 4
291 33.94 precipitation 0.1 14400 < th dose independent rect. 5 8
293 33.94 precipitation 0.1 14400 < th dose dependent rect. 5 8
296 33.95 precipitation 0.1 14400 > th dose dependent rect. 5 8
307 34.00 temperature 25.0 14400 < th dose dependent rect. 8 2
309 34.01 precipitation 0.1 14400 < th dose independent rect. 6 2
310 34.01 precipitation 0.1 14400 < th dose dependent rect. 6 2
317 34.06 humidity 90.0 14400 > th dose dependent rect. 9 5
320 34.07 humidity 90.0 14400 > th dose independent rect. 20 5
321 34.07 humidity 90.0 14400 > th dose independent rect. 18 10
328 34.10 temperature 20.0 14400 > th dose independent rect. 7 1
329 34.10 temperature 20.0 14400 < th dose independent rect. 7 1
333 34.12 humidity 90.0 14400 > th dose independent rect. 21 3
373 34.27 humidity 90.0 14400 > th dose independent rect. 20 14
420 34.43 humidity 90.0 14400 > th dose independent sin 12 NA
426 34.44 humidity 90.0 14400 > th dose independent rect. 21 1
428 34.44 temperature 20.0 14400 < th dose independent rect. 7 14
443 34.47 precipitation 0.1 14400 > th dose independent rect. 9 2
445 34.47 precipitation 0.1 14400 > th dose dependent rect. 9 2
447 34.48 precipitation 0.1 14400 < th dose independent rect. 9 2
450 34.48 precipitation 0.1 14400 < th dose dependent rect. 9 2
463 34.52 radiation 1.0 4320 < th dose dependent sin 5 NA
483 34.56 temperature 20.0 14400 > th dose independent rect. 7 13
490 34.56 radiation 1.0 4320 < th dose dependent rect. 18 16
502 34.61 radiation 1.0 4320 < th dose dependent rect. 4 6
507 34.61 radiation 1.0 4320 < th dose dependent rect. 1 9
533 34.65 temperature 25.0 1440 < th dose dependent rect. 8 1
543 34.66 radiation 1.0 4320 < th dose dependent rect. 4 12
563 34.68 radiation 1.0 4320 < th dose dependent rect. 18 19
585 34.71 temperature 20.0 14400 < th dose dependent rect. 20 1
637 34.79 humidity 90.0 14400 < th dose independent rect. 20 4
642 34.80 wind 1.0 43200 > th dose independent rect. 2 1
643 34.80 humidity 90.0 14400 < th dose independent rect. 19 6
654 34.81 humidity 90.0 14400 < th dose independent rect. 21 1
694 34.84 humidity 90.0 14400 > th dose independent rect. 9 5
794 34.99 humidity 90.0 14400 < th dose independent rect. 11 2
805 35.00 humidity 90.0 14400 > th dose independent rect. 11 3
831 35.03 humidity 90.0 14400 < th dose independent rect. 10 4
859 35.07 humidity 90.0 14400 > th dose independent rect. 7 23
860 35.07 temperature 20.0 14400 < th dose dependent rect. 7 15
867 35.08 radiation 1.0 4320 < th dose independent rect. 18 16
875 35.09 humidity 90.0 14400 > th dose independent rect. 2 9
883 35.10 wind 1.0 43200 < th dose dependent rect. 2 1
887 35.11 wind 1.0 43200 < th dose independent rect. 2 1
902 35.12 radiation 1.0 4320 > th dose independent rect. 18 16
909 35.12 temperature 20.0 14400 < th dose dependent rect. 10 12
918 35.13 radiation 1.0 4320 < th dose dependent rect. 16 19
926 35.14 radiation 1.0 4320 < th dose independent rect. 18 19
927 35.14 radiation 1.0 4320 < th dose independent rect. 18 21
930 35.14 temperature 25.0 14400 < th dose dependent sin 0 NA
932 35.15 temperature 20.0 14400 < th dose independent rect. 12 1
934 35.15 humidity 90.0 14400 > th dose independent rect. 9 20
945 35.16 temperature 20.0 14400 > th dose independent rect. 12 1
959 35.17 radiation 1.0 4320 > th dose independent rect. 18 21
973 35.18 temperature 20.0 14400 < th dose independent sin 22 NA
985 35.19 humidity 90.0 14400 < th dose independent rect. 19 15
988 35.19 radiation 1.0 4320 > th dose independent rect. 18 19
996 35.20 temperature 20.0 14400 > th dose independent sin 22 NA