BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0280300 Os09g0280300|AK073346
         (359 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0280300  Oxidoreductase, N-terminal domain containing p...   681   0.0  

>Os09g0280300 Oxidoreductase, N-terminal domain containing protein
          Length = 359

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/359 (92%), Positives = 331/359 (92%)

Query: 1   MAGDGLPRIAVVGAGIFARTQYIPRLREIAHLVLLKTIWSRTKXXXXXXXXXXXXXXXXI 60
           MAGDGLPRIAVVGAGIFARTQYIPRLREIAHLVLLKTIWSRTK                I
Sbjct: 1   MAGDGLPRIAVVGAGIFARTQYIPRLREIAHLVLLKTIWSRTKESAEAAAELARDFAPEI 60

Query: 61  QPRWGDAGLEEIMGDASISXXXXXXXXXXXXDLSLKMLKAGKHVIQEKPASGSTMEAETA 120
           QPRWGDAGLEEIMGDASIS            DLSLKMLKAGKHVIQEKPASGSTMEAETA
Sbjct: 61  QPRWGDAGLEEIMGDASISAVAVVLAGQVQVDLSLKMLKAGKHVIQEKPASGSTMEAETA 120

Query: 121 LSVYNSFPNQFPYKPIWALAENYRFEPAFVESRKLMSDIGDMMNIQVIVEGSMNSSNPYF 180
           LSVYNSFPNQFPYKPIWALAENYRFEPAFVESRKLMSDIGDMMNIQVIVEGSMNSSNPYF
Sbjct: 121 LSVYNSFPNQFPYKPIWALAENYRFEPAFVESRKLMSDIGDMMNIQVIVEGSMNSSNPYF 180

Query: 181 NSSWRRNFVGGFILDMGVHFIAGLRMMVGSEIATVSSISRHVDKALPPPDNICSLFQLEN 240
           NSSWRRNFVGGFILDMGVHFIAGLRMMVGSEIATVSSISRHVDKALPPPDNICSLFQLEN
Sbjct: 181 NSSWRRNFVGGFILDMGVHFIAGLRMMVGSEIATVSSISRHVDKALPPPDNICSLFQLEN 240

Query: 241 GCAGVFVFAVNSRTPKILWRVDGTRGTVQIERGIASGKHGYQVLFTNENGQCQTTFYPFC 300
           GCAGVFVFAVNSRTPKILWRVDGTRGTVQIERGIASGKHGYQVLFTNENGQCQTTFYPFC
Sbjct: 241 GCAGVFVFAVNSRTPKILWRVDGTRGTVQIERGIASGKHGYQVLFTNENGQCQTTFYPFC 300

Query: 301 GVNEELKAFVHDIVQANKDGDHKAEPRSSYVEGARDVAVLEAMLESSAKQGTMVQVKKF 359
           GVNEELKAFVHDIVQANKDGDHKAEPRSSYVEGARDVAVLEAMLESSAKQGTMVQVKKF
Sbjct: 301 GVNEELKAFVHDIVQANKDGDHKAEPRSSYVEGARDVAVLEAMLESSAKQGTMVQVKKF 359



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,407,248
Number of extensions: 433190
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)