BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0267500 Os09g0267500|AK121740
         (774 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0267500  WD-40 repeat containing protein                    1444   0.0  

>Os09g0267500 WD-40 repeat containing protein
          Length = 774

 Score = 1444 bits (3738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/759 (93%), Positives = 709/759 (93%)

Query: 1   MGFVDPAAPLLATCGGDTVKLFDVTVESGDPCVLAYTPAPAHPVNAVRWNHTNLIVASAG 60
           MGFVDPAAPLLATCGGDTVKLFDVTVESGDPCVLAYTPAPAHPVNAVRWNHTNLIVASAG
Sbjct: 1   MGFVDPAAPLLATCGGDTVKLFDVTVESGDPCVLAYTPAPAHPVNAVRWNHTNLIVASAG 60

Query: 61  DDKKISLWHKKGQNVGQLPTSTVDRGDDIEECIYSISFSNKGSRYLCSGGSGHIVRIWDL 120
           DDKKISLWHKKGQNVGQLPTSTVDRGDDIEECIYSISFSNKGSRYLCSGGSGHIVRIWDL
Sbjct: 61  DDKKISLWHKKGQNVGQLPTSTVDRGDDIEECIYSISFSNKGSRYLCSGGSGHIVRIWDL 120

Query: 121 QRKRCIKWLSGHTDTITGVMYNCKDEHLASISMKGDLILHNLASGARAAELSDPNGQVLR 180
           QRKRCIKWLSGHTDTITGVMYNCKDEHLASISMKGDLILHNLASGARAAELSDPNGQVLR
Sbjct: 121 QRKRCIKWLSGHTDTITGVMYNCKDEHLASISMKGDLILHNLASGARAAELSDPNGQVLR 180

Query: 181 VLDYSRNSRHILVTAGDDGSVHLWDTTARTPKVSWLKQHSAPISGVCISPSSDKIIATVG 240
           VLDYSRNSRHILVTAGDDGSVHLWDTTARTPKVSWLKQHSAPISGVCISPSSDKIIATVG
Sbjct: 181 VLDYSRNSRHILVTAGDDGSVHLWDTTARTPKVSWLKQHSAPISGVCISPSSDKIIATVG 240

Query: 241 LDKKLYTLDSGSRRPTHTIPHEAPFSSLAYNDDGTILAAGTNSGRVVFYDVRGKPQPLTI 300
           LDKKLYTLDSGSRRPTHTIPHEAPFSSLAYNDDGTILAAGTNSGRVVFYDVRGKPQPLTI
Sbjct: 241 LDKKLYTLDSGSRRPTHTIPHEAPFSSLAYNDDGTILAAGTNSGRVVFYDVRGKPQPLTI 300

Query: 301 LRAYNSSEAVTGLCWQRSKPVIVNENSSSEVALLGGSSEESVLMPDPLPSATSAFHSGGV 360
           LRAYNSSEAVTGLCWQRSKPVIVNENSSSEVALLGGSSEESVLMPDPLPSATSAFHSGGV
Sbjct: 301 LRAYNSSEAVTGLCWQRSKPVIVNENSSSEVALLGGSSEESVLMPDPLPSATSAFHSGGV 360

Query: 361 IPNLRSSLAANPSGFLXXXXXXXXXXXPYRTRPLSGGPLSKLQAPRSNFSLKDDMDVFSP 420
           IPNLRSSLAANPSGFL           PYRTRPLSGGPLSKLQAPRSNFSLKDDMDVFSP
Sbjct: 361 IPNLRSSLAANPSGFLSTSTSSTVEETPYRTRPLSGGPLSKLQAPRSNFSLKDDMDVFSP 420

Query: 421 LVDVQPFTPSSGSLWDDHGSDETKKDDKLGEKKLSTTRKFPFIEDNNEPHPISDWKSISN 480
           LVDVQPFTPSSGSLWDDHGSDETKKDDKLGEKKLSTTRKFPFIEDNNEPHPISDWKSISN
Sbjct: 421 LVDVQPFTPSSGSLWDDHGSDETKKDDKLGEKKLSTTRKFPFIEDNNEPHPISDWKSISN 480

Query: 481 SRQDDASSATTTSMPSWKSELSITSPETATGNALSDRLTHRQQVSRFGASAFQTGSFAFA 540
           SRQDDASSATTTSMPSWKSELSITSPETATGNALSDRLTHRQQVSRFGASAFQTGSFAFA
Sbjct: 481 SRQDDASSATTTSMPSWKSELSITSPETATGNALSDRLTHRQQVSRFGASAFQTGSFAFA 540

Query: 541 GLQDSAPTTGNSLKGSLTSNILMNLQNKGVLSNARPXXXXXXXXXXXXXXXXXMAKTMPP 600
           GLQDSAPTTGNSLKGSLTSNILMNLQNKGVLSNARP                 MAKTMPP
Sbjct: 541 GLQDSAPTTGNSLKGSLTSNILMNLQNKGVLSNARPSLDISTSSLQSSLSSGLMAKTMPP 600

Query: 601 VNSDQPGAAQSSSQWRPSTYTDRVSTSSVFSEGLASAFGSPKSKKTGAETKDEXXXXXXX 660
           VNSDQPGAAQSSSQWRPSTYTDRVSTSSVFSEGLASAFGSPKSKKTGAETKDE       
Sbjct: 601 VNSDQPGAAQSSSQWRPSTYTDRVSTSSVFSEGLASAFGSPKSKKTGAETKDELLSSLLS 660

Query: 661 XXXXXXXXXXXXXXXNNGVVPPQLPTSGLSADQQGASSFSLQYVQRMLEESLGSVQKSIH 720
                          NNGVVPPQLPTSGLSADQQGASSFSLQYVQRMLEESLGSVQKSIH
Sbjct: 661 RQEAAAASSSANLVANNGVVPPQLPTSGLSADQQGASSFSLQYVQRMLEESLGSVQKSIH 720

Query: 721 EDVRNLHIELLRQFHMQEMEMSGVLNLVLEKLEGLTKEV 759
           EDVRNLHIELLRQFHMQEMEMSGVLNLVLEKLEGLTKEV
Sbjct: 721 EDVRNLHIELLRQFHMQEMEMSGVLNLVLEKLEGLTKEV 759



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,673,368
Number of extensions: 1163115
Number of successful extensions: 3027
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3045
Number of HSP's successfully gapped: 1
Length of query: 774
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 665
Effective length of database: 11,344,475
Effective search space: 7544075875
Effective search space used: 7544075875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)