Os09g0267500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD-40 repeat containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os09g0267500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD-40 repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.19 | 0.245 | 7.1 | 1.4 | 0.425 | -0.813 | 0.405 | -0.916 | 1.19 | 14.3 | 24.04 | 2933 | -- | -- |
| 27.93 | 0.246 | 7.12 | 1.28 | 0.457 | -0.614 | 0.42 | -- | 1.19 | 14.1 | 30.94 | 2680 | -- | -- |
| 27.79 | 0.246 | 7.1 | 1.4 | 0.423 | -0.816 | -- | -0.9 | 1.19 | 14.2 | 23.96 | 2979 | -- | -- |
| 28.51 | 0.249 | 7.13 | 1.27 | 0.45 | -0.655 | -- | -- | 1.16 | 14.2 | 26.69 | 2760 | -- | -- |
| 36.99 | 0.285 | 7.11 | 1.47 | -- | -0.773 | -- | -0.755 | 1.23 | -- | 23.96 | 2979 | -- | -- |
| 35.62 | 0.28 | 7.09 | 1.53 | 0.398 | -- | 0.406 | -- | 1.33 | 14.2 | -- | -- | -- | -- |
| 36.24 | 0.282 | 7.09 | 1.54 | 0.398 | -- | -- | -- | 1.33 | 14.2 | -- | -- | -- | -- |
| 32.43 | 0.266 | 7.13 | 1.35 | -- | -0.815 | -- | -- | 1.18 | -- | 30.3 | 1764 | -- | -- |
| 32.54 | 0.266 | 7.21 | -- | 0.422 | -1.32 | -- | -- | 0.795 | 14.1 | 24.9 | 47520 | -- | -- |
| 45.71 | 0.316 | 7.09 | 1.53 | -- | -- | -- | -- | 1.32 | -- | -- | -- | -- | -- |
| 98.97 | 0.465 | 7.13 | -- | 0.369 | -- | -- | -- | 1.16 | 14.1 | -- | -- | -- | -- |
| 43.17 | 0.306 | 7.21 | -- | -- | -1.3 | -- | -- | 0.799 | -- | 24.52 | 47520 | -- | -- |
| 107.14 | 0.483 | 7.13 | -- | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 27.33 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 4 | 27.34 | wind | 1 | 43200 | > th | dose independent | sin | 9 | NA |
| 5 | 27.34 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 6 | 27.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 9 | 27.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 11 | 27.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 12 | 27.39 | wind | 1 | 43200 | < th | dose dependent | sin | 6 | NA |
| 18 | 27.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 19 | 27.43 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 21 | 27.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 22 | 27.44 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 37 | 27.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 50 | 27.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 60 | 27.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 76 | 27.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 144 | 27.62 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 203 | 27.66 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 243 | 27.69 | wind | 1 | 43200 | < th | dose independent | sin | 9 | NA |
| 318 | 27.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 19 |
| 338 | 27.76 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 354 | 27.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 405 | 27.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 536 | 27.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 538 | 27.90 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 551 | 27.91 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 613 | 27.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 669 | 27.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 19 |
| 673 | 27.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 722 | 28.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 21 |
| 729 | 28.01 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 750 | 28.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 772 | 28.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 793 | 28.04 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 795 | 28.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 854 | 28.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 856 | 28.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 864 | 28.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 927 | 28.08 | temperature | 20 | 4320 | > th | dose independent | sin | 20 | NA |