BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0244600 Os09g0244600|AK108228
         (146 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0244600  Conserved hypothetical protein                      131   2e-31
Os09g0395100                                                       76   9e-15
Os01g0828700                                                       76   9e-15

>Os09g0244600 Conserved hypothetical protein
          Length = 146

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 72/105 (68%)

Query: 42  HHRSPCRLLSPRQRPQVLPDLQALPPDXXXXXXXXXXXXXXXXXXXXXHLHHLELLGIRS 101
           HHRSPCRLLSPRQRPQVLPDLQALPPD                     HLHHLELLGIRS
Sbjct: 42  HHRSPCRLLSPRQRPQVLPDLQALPPDLEAPELRSLPPSPSAPGRRSPHLHHLELLGIRS 101

Query: 102 GLYVVGDHRIWSPPCSGXXXXXXXXXXXXFVYSATELGSPSPPST 146
           GLYVVGDHRIWSPPCSG            FVYSATELGSPSPPST
Sbjct: 102 GLYVVGDHRIWSPPCSGHRLLRLLRRHRLFVYSATELGSPSPPST 146



>Os09g0395100 
          Length = 132

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 39/54 (72%)

Query: 90  HLHHLELLGIRSGLYVVGDHRIWSPPCSGXXXXXXXXXXXXFVYSATELGSPSP 143
           HLHH ELLG RSGLYVV DHRIWSPPCSG            FVYSATELGSPSP
Sbjct: 79  HLHHPELLGTRSGLYVVRDHRIWSPPCSGHRLLRLLRRRRLFVYSATELGSPSP 132



>Os01g0828700 
          Length = 132

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 39/54 (72%)

Query: 90  HLHHLELLGIRSGLYVVGDHRIWSPPCSGXXXXXXXXXXXXFVYSATELGSPSP 143
           HLHH ELLG RSGLYVV DHRIWSPPCSG            FVYSATELGSPSP
Sbjct: 79  HLHHPELLGTRSGLYVVRDHRIWSPPCSGHRLLRLLRRRRLFVYSATELGSPSP 132



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.140    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,401,197
Number of extensions: 86866
Number of successful extensions: 125
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 3
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)