BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0241100 Os09g0241100|AK099930
         (935 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0241100  WD40-like domain containing protein                1678   0.0  

>Os09g0241100 WD40-like domain containing protein
          Length = 935

 Score = 1678 bits (4346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/935 (88%), Positives = 825/935 (88%)

Query: 1   MIFQLRNAIVXXXXXXXXXXXXXXPYLRHCGREIRCIFPAVLHQKLPAKRPFPRGGTRQN 60
           MIFQLRNAIV              PYLRHCGREIRCIFPAVLHQKLPAKRPFPRGGTRQN
Sbjct: 1   MIFQLRNAIVKHIFLLSLFLKISLPYLRHCGREIRCIFPAVLHQKLPAKRPFPRGGTRQN 60

Query: 61  PPKCLQPKPHPAYRQSLETPNKFLNTRRHHSFXXXXXXXXXXXXXXTMKGRAVKLREAHK 120
           PPKCLQPKPHPAYRQSLETPNKFLNTRRHHSF              TMKGRAVKLREAHK
Sbjct: 61  PPKCLQPKPHPAYRQSLETPNKFLNTRRHHSFSLVGEESLVVVVGVTMKGRAVKLREAHK 120

Query: 121 AGSPVFCSVAWGQGGQHVVTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIRLHKD 180
           AGSPVFCSVAWGQGGQHVVTAS                               TIRLHKD
Sbjct: 121 AGSPVFCSVAWGQGGQHVVTASAADVAILIHDAAAVAAAGGRSSGSAAAAALSTIRLHKD 180

Query: 181 GVTXXXXXXXXXXXXXXXXIDHSVKFCSFPEGVFQSNIARFTLPIRSLAFNKKGTLLAAA 240
           GVT                IDHSVKFCSFPEGVFQSNIARFTLPIRSLAFNKKGTLLAAA
Sbjct: 181 GVTALAVAPGSGASLASGSIDHSVKFCSFPEGVFQSNIARFTLPIRSLAFNKKGTLLAAA 240

Query: 241 GDDDGIKLIATIDNTISKVLKGHKGSVTGLSFDPRNDYLASIDTFGTVIFWDLCTGTEAR 300
           GDDDGIKLIATIDNTISKVLKGHKGSVTGLSFDPRNDYLASIDTFGTVIFWDLCTGTEAR
Sbjct: 241 GDDDGIKLIATIDNTISKVLKGHKGSVTGLSFDPRNDYLASIDTFGTVIFWDLCTGTEAR 300

Query: 301 SLKRIAPTFGSDHSINNALCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVC 360
           SLKRIAPTFGSDHSINNALCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVC
Sbjct: 301 SLKRIAPTFGSDHSINNALCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVC 360

Query: 361 SLCWSPNGRYLVTAGLDKQVLIWDVKSKQDVERQKFDERICSLAWKPESNAVAVIDVTGR 420
           SLCWSPNGRYLVTAGLDKQVLIWDVKSKQDVERQKFDERICSLAWKPESNAVAVIDVTGR
Sbjct: 361 SLCWSPNGRYLVTAGLDKQVLIWDVKSKQDVERQKFDERICSLAWKPESNAVAVIDVTGR 420

Query: 421 FGIWESVIPSTLKSPTEGAPDLNSTKVPLFDDEDDEERPSTXXXXXXXXXXXXXXXXXPF 480
           FGIWESVIPSTLKSPTEGAPDLNSTKVPLFDDEDDEERPST                 PF
Sbjct: 421 FGIWESVIPSTLKSPTEGAPDLNSTKVPLFDDEDDEERPSTSGGLDDDDDDESLGELGPF 480

Query: 481 NHKRLRRKSTYHDHSNGDSEDEDLILQMESRKRMKDTHRDNKEVADKAIGDSATSVRLVT 540
           NHKRLRRKSTYHDHSNGDSEDEDLILQMESRKRMKDTHRDNKEVADKAIGDSATSVRLVT
Sbjct: 481 NHKRLRRKSTYHDHSNGDSEDEDLILQMESRKRMKDTHRDNKEVADKAIGDSATSVRLVT 540

Query: 541 ARMQTAFQPGSTPPQPGKRNFLAYNMLGSITTIENEGHSHVEVDFHDTGRGPRVPSMTDY 600
           ARMQTAFQPGSTPPQPGKRNFLAYNMLGSITTIENEGHSHVEVDFHDTGRGPRVPSMTDY
Sbjct: 541 ARMQTAFQPGSTPPQPGKRNFLAYNMLGSITTIENEGHSHVEVDFHDTGRGPRVPSMTDY 600

Query: 601 FGFTMAALNESGSVFANPCKGDKNMSTLMYRPFSSWAGNSEWSMRFXXXXXXXXXXXXXX 660
           FGFTMAALNESGSVFANPCKGDKNMSTLMYRPFSSWAGNSEWSMRF              
Sbjct: 601 FGFTMAALNESGSVFANPCKGDKNMSTLMYRPFSSWAGNSEWSMRFEGEEVKAVAVGVGW 660

Query: 661 XXXXTTLNFLRIFTEGGLQMHILSVGGPVVTAAGHGDQLAIVSHASDCLSSGDQVLDVKV 720
               TTLNFLRIFTEGGLQMHILSVGGPVVTAAGHGDQLAIVSHASDCLSSGDQVLDVKV
Sbjct: 661 VAAVTTLNFLRIFTEGGLQMHILSVGGPVVTAAGHGDQLAIVSHASDCLSSGDQVLDVKV 720

Query: 721 LKISECAQSLSSRLVLTPASKLSWFGFSENGELSSFDSKGILRVFSGQFGGSWIPIFSSI 780
           LKISECAQSLSSRLVLTPASKLSWFGFSENGELSSFDSKGILRVFSGQFGGSWIPIFSSI
Sbjct: 721 LKISECAQSLSSRLVLTPASKLSWFGFSENGELSSFDSKGILRVFSGQFGGSWIPIFSSI 780

Query: 781 KARKSEDESHWVVGLDANNIFCILCKSPESYPQVMPKPVLTILELSFPLASSDLGANSLE 840
           KARKSEDESHWVVGLDANNIFCILCKSPESYPQVMPKPVLTILELSFPLASSDLGANSLE
Sbjct: 781 KARKSEDESHWVVGLDANNIFCILCKSPESYPQVMPKPVLTILELSFPLASSDLGANSLE 840

Query: 841 TEFMMRKLHLSQIQKKIEEMAALGLDTIALDDEAFNMEAALDRCILRLISSCCNGDKLVR 900
           TEFMMRKLHLSQIQKKIEEMAALGLDTIALDDEAFNMEAALDRCILRLISSCCNGDKLVR
Sbjct: 841 TEFMMRKLHLSQIQKKIEEMAALGLDTIALDDEAFNMEAALDRCILRLISSCCNGDKLVR 900

Query: 901 ATELAKLLTLEKSMKGALMLVTRLKLPILQERFSA 935
           ATELAKLLTLEKSMKGALMLVTRLKLPILQERFSA
Sbjct: 901 ATELAKLLTLEKSMKGALMLVTRLKLPILQERFSA 935



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,849,977
Number of extensions: 1236864
Number of successful extensions: 3928
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3968
Number of HSP's successfully gapped: 1
Length of query: 935
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 825
Effective length of database: 11,292,261
Effective search space: 9316115325
Effective search space used: 9316115325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)