Os09g0241100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os09g0241100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.68 | 0.575 | 6.08 | -0.387 | 0.974 | -1.76 | -0.923 | -3.03 | 0.2 | 23.1 | 26.97 | 1239 | -- | -- |
| 155.86 | 0.581 | 6.13 | -0.95 | 0.873 | -1.62 | -0.591 | -- | 0.142 | 23.4 | 33.21 | 1050 | -- | -- |
| 152.95 | 0.576 | 6.09 | -0.381 | 1.02 | -1.73 | -- | -2.86 | 0.199 | 23.2 | 26.75 | 1302 | -- | -- |
| 157.8 | 0.585 | 6.13 | -0.934 | 0.857 | -1.61 | -- | -- | 0.145 | 23.5 | 33.35 | 1049 | -- | -- |
| 191.52 | 0.645 | 6.1 | -0.671 | -- | -2.25 | -- | -1.98 | 0.0917 | -- | 29.11 | 893 | -- | -- |
| 195.59 | 0.656 | 6.08 | -0.493 | 1.11 | -- | -0.587 | -- | 0.421 | 23.5 | -- | -- | -- | -- |
| 197.05 | 0.657 | 6.07 | -0.47 | 1.11 | -- | -- | -- | 0.423 | 23.5 | -- | -- | -- | -- |
| 194.16 | 0.649 | 6.15 | -1.04 | -- | -2.2 | -- | -- | 0.0103 | -- | 30.65 | 893 | -- | -- |
| 177.93 | 0.621 | 6.1 | -- | 0.902 | -1.21 | -- | -- | 0.311 | 23.5 | 35.41 | 1029 | -- | -- |
| 274.31 | 0.774 | 6.05 | -0.44 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 202.87 | 0.666 | 6.06 | -- | 1.1 | -- | -- | -- | 0.475 | 23.5 | -- | -- | -- | -- |
| 220.66 | 0.692 | 6.1 | -- | -- | -1.8 | -- | -- | 0.22 | -- | 31.74 | 882 | -- | -- |
| 279.41 | 0.78 | 6.04 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 15 | 146.87 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 39 | 148.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 51 | 148.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 55 | 148.65 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 69 | 148.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 73 | 148.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 90 | 149.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 105 | 149.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 139 | 149.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 254 | 149.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 499 | 150.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 711 | 151.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 902 | 151.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 919 | 151.64 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 974 | 151.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |