BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0238700 Os09g0238700|AK106625
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0238700  Conserved hypothetical protein                      181   1e-46
Os06g0631950  Conserved hypothetical protein                      114   1e-26

>Os09g0238700 Conserved hypothetical protein
          Length = 109

 Score =  181 bits (458), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 20  FVADIHPIAGSRRASPEFSSDSCVSVVGGEQRYQRHLKHRGWQDSERRLRIRGPMGRSPS 79
           FVADIHPIAGSRRASPEFSSDSCVSVVGGEQRYQRHLKHRGWQDSERRLRIRGPMGRSPS
Sbjct: 20  FVADIHPIAGSRRASPEFSSDSCVSVVGGEQRYQRHLKHRGWQDSERRLRIRGPMGRSPS 79

Query: 80  SLKRWRRMSVNCCWRCARQVSAAKEYRRSV 109
           SLKRWRRMSVNCCWRCARQVSAAKEYRRSV
Sbjct: 80  SLKRWRRMSVNCCWRCARQVSAAKEYRRSV 109



>Os06g0631950 Conserved hypothetical protein
          Length = 129

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 57/62 (91%)

Query: 21 VADIHPIAGSRRASPEFSSDSCVSVVGGEQRYQRHLKHRGWQDSERRLRIRGPMGRSPSS 80
          V DIHPIAGSRRASPE S DSCVSVVGGEQRYQRHLKHRGWQDSERRLRI GPMGRSPSS
Sbjct: 35 VTDIHPIAGSRRASPESSFDSCVSVVGGEQRYQRHLKHRGWQDSERRLRIWGPMGRSPSS 94

Query: 81 LK 82
           K
Sbjct: 95 PK 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.132    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,383,686
Number of extensions: 129861
Number of successful extensions: 544
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)