Os09g0238700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0238700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.93 | 0.519 | 4.61 | -1.07 | 0.422 | 1.53 | -0.067 | -2.15 | -0.0159 | 23.9 | 23.6 | 1341 | -- | -- |
| 125.51 | 0.522 | 4.57 | -0.518 | 0.547 | 1.43 | 0.0298 | -- | 0.0461 | 0.0549 | 22.82 | 1416 | -- | -- |
| 121.95 | 0.514 | 4.61 | -1.07 | 0.422 | 1.53 | -- | -2.16 | -0.0157 | 24 | 23.6 | 1340 | -- | -- |
| 124.21 | 0.519 | 4.55 | -0.446 | 0.451 | 1.31 | -- | -- | 0.101 | 0.023 | 22.8 | 1362 | -- | -- |
| 127.48 | 0.526 | 4.6 | -1.08 | -- | 1.76 | -- | -2.37 | -0.0469 | -- | 23.21 | 1127 | -- | -- |
| 188.8 | 0.644 | 4.48 | 0.0129 | 0.584 | -- | 0.109 | -- | 0.4 | 0.672 | -- | -- | -- | -- |
| 188.85 | 0.644 | 4.48 | 0.009 | 0.584 | -- | -- | -- | 0.399 | 0.623 | -- | -- | -- | -- |
| 130.35 | 0.532 | 4.53 | -0.468 | -- | 1.54 | -- | -- | 0.11 | -- | 22.8 | 1126 | -- | -- |
| 129.2 | 0.529 | 4.52 | -- | 0.438 | 1.23 | -- | -- | 0.193 | 0.0609 | 22.97 | 1341 | -- | -- |
| 210.2 | 0.677 | 4.47 | 0.0297 | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
| 188.85 | 0.643 | 4.48 | -- | 0.584 | -- | -- | -- | 0.398 | 0.624 | -- | -- | -- | -- |
| 135.6 | 0.542 | 4.52 | -- | -- | 1.44 | -- | -- | 0.18 | -- | 22.8 | 1113 | -- | -- |
| 210.22 | 0.677 | 4.47 | -- | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 12 | 121.77 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 17 | 121.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 18 | 121.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 19 | 121.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 71 | 122.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 90 | 122.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 122 | 122.73 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 143 | 122.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 146 | 122.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 149 | 122.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 152 | 122.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 157 | 122.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 170 | 122.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 173 | 122.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 182 | 123.05 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 205 | 123.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 291 | 123.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 320 | 123.37 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 438 | 123.69 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 522 | 123.93 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 540 | 123.96 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 22 |
| 550 | 123.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 616 | 124.06 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 644 | 124.11 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 865 | 124.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 881 | 124.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 930 | 125.11 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 957 | 125.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 964 | 125.18 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 967 | 125.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 971 | 125.22 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 984 | 125.27 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 8 |