BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0122000 Os09g0122000|J075174C07
         (275 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0122000  Conserved hypothetical protein                      508   e-144

>Os09g0122000 Conserved hypothetical protein
          Length = 275

 Score =  508 bits (1309), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/261 (95%), Positives = 248/261 (95%)

Query: 15  VGSYRFHIPRQPPRIQAEGGKRHMIIGDRRHGGTALWRRGSMLPPSLPRWGVEDGHGHVD 74
           VGSYRFHIPRQPPRIQAEGGKRHMIIGDRRHGGTALWRRGSMLPPSLPRWGVEDGHGHVD
Sbjct: 15  VGSYRFHIPRQPPRIQAEGGKRHMIIGDRRHGGTALWRRGSMLPPSLPRWGVEDGHGHVD 74

Query: 75  GSSRQHPSELGFSSALSVPIGGWIWRLAAAQAHGEVIDGGRCEDEAGDHXXXXXXXXXXX 134
           GSSRQHPSELGFSSALSVPIGGWIWRLAAAQAHGEVIDGGRCEDEAGDH           
Sbjct: 75  GSSRQHPSELGFSSALSVPIGGWIWRLAAAQAHGEVIDGGRCEDEAGDHMQPPPASSASM 134

Query: 135 XXLSEERISASGIVVRERQLHGYGERPFQPCLATMAAKGTAREISTKKIAKKDHGEVGDL 194
             LSEERISASGIVVRERQLHGYGERPFQPCLATMAAKGTAREISTKKIAKKDHGEVGDL
Sbjct: 135 AMLSEERISASGIVVRERQLHGYGERPFQPCLATMAAKGTAREISTKKIAKKDHGEVGDL 194

Query: 195 TMAVLMPSWTSTGNHSSRNPTRCLEQLPEPSKRAHSEAYGNMQLATGDLIVGLHKQATIT 254
           TMAVLMPSWTSTGNHSSRNPTRCLEQLPEPSKRAHSEAYGNMQLATGDLIVGLHKQATIT
Sbjct: 195 TMAVLMPSWTSTGNHSSRNPTRCLEQLPEPSKRAHSEAYGNMQLATGDLIVGLHKQATIT 254

Query: 255 VPPPNISEVNFLGHPYVFKCN 275
           VPPPNISEVNFLGHPYVFKCN
Sbjct: 255 VPPPNISEVNFLGHPYVFKCN 275



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,760,221
Number of extensions: 474514
Number of successful extensions: 1122
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)