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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0122000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0286) R2 : 0.253
β1 : 0.258 (0.105) R2dD : 0.0113 R2D : -0.0424
β2 : -- (--) R2dC : -- R2C : --
β3 : 9.52 (0.798) R2dE : 2.5 R2E : -1.66
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 19.9 (1.92) R2dD*E : 1.86 R2D*E : -2.18
γ1 : 0.0805 (0.0586) R2dN8 : 0.00424 R2N8 : -0.0261
σ : 0.509
deviance : 119.66
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_____
C
peak time of C : --
E
wheather : wind
threshold : 9.7
memory length : 194
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.94
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.26 0.513 2.98 0.236 0.0687 8.93 -0.717 18.5 0.0799 5.42 9.564 189 2.07 --
150.3 0.571 2.91 -0.113 0.0803 2.98 0.432 -- 0.0866 12.9 9.876 31 2.25 --
119.47 0.509 2.98 0.248 0.0711 9.41 -- 19.7 0.0917 6.04 9.7 195 1.94 --
145.95 0.563 2.89 0.0421 0.00327 4.45 -- -- 0.0738 8.9 9.456 30 0.552 --
119.66 0.509 2.99 0.258 -- 9.52 -- 19.9 0.0805 -- 9.7 194 1.94 --
158.7 0.591 2.91 -0.152 0.0242 -- -0.537 -- 0.0155 5.8 -- -- -- --
159.1 0.591 2.91 -0.154 0.0728 -- -- -- 0.0185 10.6 -- -- -- --
143.79 0.558 2.88 -0.0448 -- 4.22 -- -- 0.0625 -- 9.2 31 1.12e-07 --
143.91 0.559 2.89 -- 0.0578 4.35 -- -- 0.0673 9.41 9.3 31 0.00351 --
159.43 0.59 2.91 -0.155 -- -- -- -- 0.0181 -- -- -- -- --
159.72 0.591 2.9 -- 0.0739 -- -- -- 0.0356 10.8 -- -- -- --
143.6 0.558 2.9 -- -- 3.84 -- -- 0.0651 -- 9.2 31 1.42e-05 --
160.06 0.591 2.9 -- -- -- -- -- 0.0353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.57 wind 9.0 90 > th dose dependent rect. 11 3
3 134.13 wind 9.0 270 > th dose dependent rect. 11 1
4 134.91 wind 9.0 270 > th dose dependent rect. 19 18
7 135.40 wind 9.0 90 > th dose independent rect. 11 3
11 136.05 wind 9.0 270 > th dose dependent sin 8 NA
14 136.25 wind 9.0 10 > th dose independent rect. 13 1
26 136.25 wind 9.0 10 > th dose dependent rect. 13 1
74 137.17 wind 9.0 90 > th dose dependent rect. 22 12
88 137.70 wind 9.0 90 > th dose independent rect. 22 12
90 137.80 wind 9.0 270 > th dose independent rect. 19 18
93 137.98 wind 9.0 1440 > th dose independent rect. 22 1
105 137.98 wind 9.0 1440 > th dose dependent rect. 22 1
117 138.04 wind 9.0 270 > th dose independent rect. 22 4
125 138.04 wind 9.0 270 > th dose dependent rect. 22 4
134 138.08 wind 7.0 90 > th dose independent rect. 22 1
136 138.08 wind 7.0 90 > th dose dependent rect. 22 1
190 138.28 wind 9.0 270 < th dose independent sin 8 NA
232 139.48 wind 9.0 270 > th dose independent sin 8 NA
292 140.37 wind 9.0 270 > th dose dependent rect. 9 4
363 141.77 radiation 10.0 270 < th dose independent rect. 10 1
386 142.53 wind 9.0 30 > th dose dependent sin 4 NA
455 143.41 precipitation 0.1 10 > th dose independent rect. 17 1
483 143.41 precipitation 0.1 10 > th dose dependent rect. 17 1
511 143.42 humidity 90.0 10 > th dose independent rect. 17 1
521 143.42 humidity 90.0 10 > th dose dependent rect. 17 1
546 144.09 wind 9.0 30 > th dose independent sin 2 NA
595 144.44 wind 9.0 30 < th dose independent sin 3 NA
683 145.01 radiation 10.0 270 < th dose dependent rect. 10 1
738 145.37 radiation 10.0 10 < th dose independent rect. 14 1