BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0120800 Os09g0120800|AK066284
(91 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0120800 Similar to Cation-transporting ATPase 192 4e-50
Os11g0446500 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-trans... 132 4e-32
Os05g0335401 Similar to Cation-transporting ATPase 72 7e-14
Os05g0100600 Similar to Potential phospholipid-transporting... 67 2e-12
>Os09g0120800 Similar to Cation-transporting ATPase
Length = 91
Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MVTLDLAKGVYAKFIDWDEQMFDRETCTPAHSANTAISEDLGQVEYVLSDRTGTLTENIM 60
MVTLDLAKGVYAKFIDWDEQMFDRETCTPAHSANTAISEDLGQVEYVLSDRTGTLTENIM
Sbjct: 1 MVTLDLAKGVYAKFIDWDEQMFDRETCTPAHSANTAISEDLGQVEYVLSDRTGTLTENIM 60
Query: 61 IFRRCCMSDTLYGENNGDALKVACQMLIHEC 91
IFRRCCMSDTLYGENNGDALKVACQMLIHEC
Sbjct: 61 IFRRCCMSDTLYGENNGDALKVACQMLIHEC 91
>Os11g0446500 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein
Length = 1107
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 69/80 (86%)
Query: 2 VTLDLAKGVYAKFIDWDEQMFDRETCTPAHSANTAISEDLGQVEYVLSDRTGTLTENIMI 61
V+LD K +YAKFIDWDE+M+D ET TPAH+ANTAISEDLGQVEY+L+D+TGTLTEN MI
Sbjct: 390 VSLDFVKSLYAKFIDWDEEMYDHETDTPAHAANTAISEDLGQVEYILTDKTGTLTENKMI 449
Query: 62 FRRCCMSDTLYGENNGDALK 81
FRRCC+ T YG +GDAL+
Sbjct: 450 FRRCCIGGTFYGNESGDALR 469
>Os05g0335401 Similar to Cation-transporting ATPase
Length = 64
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 28 TPAHSAN-TAISEDLGQVEYVLSDRTGTLTENIMIFRRCCMSDTLYGENNG 77
T S N T ISEDLGQVEY+LSD TGTLTEN MIFRRCCMSDTL+ + G
Sbjct: 1 TNVRSGNITTISEDLGQVEYILSDGTGTLTENRMIFRRCCMSDTLWRKQWG 51
>Os05g0100600 Similar to Potential phospholipid-transporting ATPase 7 (EC
3.6.3.1) (Aminophospholipid flippase 7)
Length = 501
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 51/72 (70%)
Query: 2 VTLDLAKGVYAKFIDWDEQMFDRETCTPAHSANTAISEDLGQVEYVLSDRTGTLTENIMI 61
+++++ K + A FI+ D M+ ET TPAH+ + ++E+LGQV+ +L+D+TGTLT N M
Sbjct: 137 ISIEIVKLLQALFINQDIHMYHEETDTPAHARTSNLNEELGQVDTILTDKTGTLTCNSME 196
Query: 62 FRRCCMSDTLYG 73
F +C ++ T YG
Sbjct: 197 FIKCSIAGTAYG 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,803,427
Number of extensions: 88560
Number of successful extensions: 198
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 4
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)