BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0109800 Os09g0109800|AK065455
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0109800 Citrate transporter family protein 917 0.0
>Os09g0109800 Citrate transporter family protein
Length = 529
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/529 (87%), Positives = 461/529 (87%)
Query: 1 MAALSSCLLAAVRXXXXXXXXXXXXXXXXXALRHRHRLSQAPPLATSLPRPRPPWCRFSA 60
MAALSSCLLAAVR ALRHRHRLSQAPPLATSLPRPRPPWCRFSA
Sbjct: 1 MAALSSCLLAAVRPHPPPPPRPLSPSFIPSALRHRHRLSQAPPLATSLPRPRPPWCRFSA 60
Query: 61 SSXXXXXXXXXXYELLDTTGNCDPLCSVDEVSSQYFEANYKPKNDXXXXXXXXXXXXXXX 120
SS YELLDTTGNCDPLCSVDEVSSQYFEANYKPKND
Sbjct: 61 SSPPPPPDDPDDYELLDTTGNCDPLCSVDEVSSQYFEANYKPKNDLLKALTIIATALAGA 120
Query: 121 XXXNHSWVAEHQDIAMVLVFALGYAGIIFEESLAFNKSGVGLLMAVCLWVIRSIGAPSTD 180
NHSWVAEHQDIAMVLVFALGYAGIIFEESLAFNKSGVGLLMAVCLWVIRSIGAPSTD
Sbjct: 121 AAINHSWVAEHQDIAMVLVFALGYAGIIFEESLAFNKSGVGLLMAVCLWVIRSIGAPSTD 180
Query: 181 VAVQELSHTTAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNISTRNPRTLLWVIGFVTF 240
VAVQELSHTTAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNISTRNPRTLLWVIGFVTF
Sbjct: 181 VAVQELSHTTAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNISTRNPRTLLWVIGFVTF 240
Query: 241 FLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVISANAGGAWTPIGDVTTTMLWIH 300
FLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVISANAGGAWTPIGDVTTTMLWIH
Sbjct: 241 FLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVISANAGGAWTPIGDVTTTMLWIH 300
Query: 301 GQITTLNTMQGLFLPSVVSLAVPLALMSLTSEANGXXXXXXXXXXXEQMAPRGQLVFAVG 360
GQITTLNTMQGLFLPSVVSLAVPLALMSLTSEANG EQMAPRGQLVFAVG
Sbjct: 301 GQITTLNTMQGLFLPSVVSLAVPLALMSLTSEANGSSQKSSSLLSSEQMAPRGQLVFAVG 360
Query: 361 LGALVFVPVFKALTGLPPFMGMMLGLAILWILTDAIHYGDSGRQRLKVPQALSRIDTQGV 420
LGALVFVPVFKALTGLPPFMGMMLGLAILWILTDAIHYGDSGRQRLKVPQALSRIDTQGV
Sbjct: 361 LGALVFVPVFKALTGLPPFMGMMLGLAILWILTDAIHYGDSGRQRLKVPQALSRIDTQGV 420
Query: 421 LFFLGILMSVGSLESAGILRQLANYLDANIPNADLXXXXXXXXXXXXDNVPLVAATMGMC 480
LFFLGILMSVGSLESAGILRQLANYLDANIPNADL DNVPLVAATMGMC
Sbjct: 421 LFFLGILMSVGSLESAGILRQLANYLDANIPNADLIASAIGVASAIIDNVPLVAATMGMC 480
Query: 481 GFHGNGKGGFLLVFPQGKLNFYSNNKWSCGTTYTIQNRMLQNKKLIRCG 529
GFHGNGKGGFLLVFPQGKLNFYSNNKWSCGTTYTIQNRMLQNKKLIRCG
Sbjct: 481 GFHGNGKGGFLLVFPQGKLNFYSNNKWSCGTTYTIQNRMLQNKKLIRCG 529
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,277,444
Number of extensions: 551511
Number of successful extensions: 1302
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1300
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)