BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0103700 Os09g0103700|AK071092
         (377 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0103700  Zinc finger, CCHC-type domain containing protein    268   4e-72
Os05g0297400                                                      197   1e-50

>Os09g0103700 Zinc finger, CCHC-type domain containing protein
          Length = 377

 Score =  268 bits (686), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 140/214 (65%), Positives = 140/214 (65%)

Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPENNKHQXXXXXXXXXXXXXXX 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPENNKHQ               
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPENNKHQPPSSSVSANAAAANA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXYTSFQGLLALARITGSNSDETRGACRKCGRVGHLTFQ 120
                                  YTSFQGLLALARITGSNSDETRGACRKCGRVGHLTFQ
Sbjct: 61  AAASAPSASAPSSSSAAASSDNAYTSFQGLLALARITGSNSDETRGACRKCGRVGHLTFQ 120

Query: 121 CRNFLSVKEDLDMEDDIDAGIRAASQANAQAKLDEFRKKTSGGKXXXXXXXXXXXXXXXX 180
           CRNFLSVKEDLDMEDDIDAGIRAASQANAQAKLDEFRKKTSGGK                
Sbjct: 121 CRNFLSVKEDLDMEDDIDAGIRAASQANAQAKLDEFRKKTSGGKDADEGSDDEDEDDEED 180

Query: 181 XXXXXXXXXXPELXXXXXXXXXXKSGRKHSRDEE 214
                     PEL          KSGRKHSRDEE
Sbjct: 181 SDDSSDSDIDPELERIIAERERAKSGRKHSRDEE 214



>Os05g0297400 
          Length = 297

 Score =  197 bits (501), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 112/164 (68%), Gaps = 21/164 (12%)

Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP-ENNKHQXXXXXXXXXXXXXX 59
           MPATAGRVRMPANNRVHSSAALQTH IWQSAIGYDPYAP E +KHQ              
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHCIWQSAIGYDPYAPAERSKHQAPSSSSVSAAAAAA 60

Query: 60  XXXXXXXXXXXXXXXXXXXXXXXXYTSFQGLLALARITGSNSDETRGACRKCGRVGHLTF 119
                                   YTS+Q LL + R TGS SDETRG CRKCGRVGHLTF
Sbjct: 61  SAPSENT-----------------YTSYQSLLTIIRATGSTSDETRGGCRKCGRVGHLTF 103

Query: 120 QCRNFLSVKEDLDMEDDIDAGIRAASQANAQAKLDEFRKKTSGG 163
           QCRNFL VK DLDM+DD++AGIR A  A++QAKLDEFRKKTSGG
Sbjct: 104 QCRNFLCVK-DLDMDDDVEAGIRQA--ASSQAKLDEFRKKTSGG 144



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,805,113
Number of extensions: 148651
Number of successful extensions: 640
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)