BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0103400 Os09g0103400|AK064377
         (331 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0103400  Conserved hypothetical protein                      382   e-106
Os01g0632400                                                       69   4e-12

>Os09g0103400 Conserved hypothetical protein
          Length = 331

 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 211/284 (74%)

Query: 48  HGAPTKKAPFVAXXXXXXXXXXXQQNGKEVSDSPSLPTNSAIVLSPLPPPLQANKNHXXX 107
           HGAPTKKAPFVA           QQNGKEVSDSPSLPTNSAIVLSPLPPPLQANKNH   
Sbjct: 48  HGAPTKKAPFVAPPPPPPPPPPPQQNGKEVSDSPSLPTNSAIVLSPLPPPLQANKNHQDQ 107

Query: 108 XXXXXXXXXXXXPPLPTNNAIVLAPPNNXXXXXXXXXXXXXXXALKANKIVXXXXXXXXX 167
                       PPLPTNNAIVLAPPNN               ALKANKIV         
Sbjct: 108 DSESDSDSDDDEPPLPTNNAIVLAPPNNQESESDSDSDDDQESALKANKIVSSSGDDDQE 167

Query: 168 XXXXXXETLPALQANKNASPXXXXXXXXXXXXXXXXXVLLDPALQANKNVLAFNGKRKVP 227
                 ETLPALQANKNASP                 VLLDPALQANKNVLAFNGKRKVP
Sbjct: 168 SDSSDDETLPALQANKNASPSDDDEDDDQESDSGDDDVLLDPALQANKNVLAFNGKRKVP 227

Query: 228 PQEVGQSLRQPKKKKMEAPAQGNTDIDTQFKEKIASYFFLGKVVSLLDEEHPDLFKEAFL 287
           PQEVGQSLRQPKKKKMEAPAQGNTDIDTQFKEKIASYFFLGKVVSLLDEEHPDLFKEAFL
Sbjct: 228 PQEVGQSLRQPKKKKMEAPAQGNTDIDTQFKEKIASYFFLGKVVSLLDEEHPDLFKEAFL 287

Query: 288 KLADSKASALDAKIKQLTLAQVRVSLKGRDLEKELIKLLSGFLK 331
           KLADSKASALDAKIKQLTLAQVRVSLKGRDLEKELIKLLSGFLK
Sbjct: 288 KLADSKASALDAKIKQLTLAQVRVSLKGRDLEKELIKLLSGFLK 331



>Os01g0632400 
          Length = 133

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 293 KASALDAKIKQLTLAQVRVSLKGRDLEKELIKLLSGFLK 331
           KASALDAKIKQLTLAQVRVSL+GR LEKELIKLLSG LK
Sbjct: 95  KASALDAKIKQLTLAQVRVSLQGRGLEKELIKLLSGLLK 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,258,125
Number of extensions: 251905
Number of successful extensions: 561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)