BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0564900 Os08g0564900|AK120585
         (100 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0564900  Conserved hypothetical protein                      200   2e-52
Os09g0442400  t-snare domain containing protein                    91   2e-19

>Os08g0564900 Conserved hypothetical protein
          Length = 100

 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MKWKLLSMVTLLTIAQIKESSTRLVKNHDMLYMPSNLGDLKEVVVHIQRDIKTVGDSMSI 60
           MKWKLLSMVTLLTIAQIKESSTRLVKNHDMLYMPSNLGDLKEVVVHIQRDIKTVGDSMSI
Sbjct: 1   MKWKLLSMVTLLTIAQIKESSTRLVKNHDMLYMPSNLGDLKEVVVHIQRDIKTVGDSMSI 60

Query: 61  KMQYLQSTANDIANVVGKSLENHMQLLDGQSKAMVSLINL 100
           KMQYLQSTANDIANVVGKSLENHMQLLDGQSKAMVSLINL
Sbjct: 61  KMQYLQSTANDIANVVGKSLENHMQLLDGQSKAMVSLINL 100



>Os09g0442400 t-snare domain containing protein
          Length = 639

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 52/66 (78%)

Query: 35  SNLGDLKEVVVHIQRDIKTVGDSMSIKMQYLQSTANDIANVVGKSLENHMQLLDGQSKAM 94
           + +  LKE  V IQR+IKTVGDSMS KMQ LQSTANDI +V GKSLEN MQLLDGQSKAM
Sbjct: 288 NGMDKLKEEAVDIQREIKTVGDSMSTKMQDLQSTANDIGSVAGKSLENQMQLLDGQSKAM 347

Query: 95  VSLINL 100
             L NL
Sbjct: 348 DGLNNL 353



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,400,123
Number of extensions: 65470
Number of successful extensions: 205
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 31
Effective length of database: 13,433,035
Effective search space: 416424085
Effective search space used: 416424085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)