BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0561500 Os08g0561500|AK071683
         (421 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0561500  Similar to Nodulin-like protein 5NG4                138   8e-33

>Os08g0561500 Similar to Nodulin-like protein 5NG4
          Length = 421

 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 94/207 (45%)

Query: 1   NQNXXXXXCTEGVRVXXXXXXXXXXXXXXVRLRGVPCGVSVCPQHGHQQAXXXXXXXXXX 60
           NQN     CTEGVRV              VRLRGVPCGVSVCPQHGHQQA          
Sbjct: 1   NQNGGGGGCTEGVRVAGAGAAPWGDAGAAVRLRGVPCGVSVCPQHGHQQARLPRLPQHHR 60

Query: 61  XXXXXXXXXXXXEEGSAAADAELRGAVLPAGAVRHHRQPGLLPPRTRQHLPDLRLRHPEX 120
                       EEGSAAADAELRGAVLPAGAVRHHRQPGLLPPRTRQHLPDLRLRHPE 
Sbjct: 61  PHPPRPLRLFPREEGSAAADAELRGAVLPAGAVRHHRQPGLLPPRTRQHLPDLRLRHPEL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYHLRSQXXXXXXX 180
                                                         PYHLRSQ       
Sbjct: 121 RPGHHLRHGRRAPHRARPPRPPRRRRQGARHAGLRRRRLRHHALQGPYHLRSQAAAAGGG 180

Query: 181 XXXXXXXXXXXXXXXXXXLRVLDRALP 207
                             LRVLDRALP
Sbjct: 181 GGAVEGGDRRRGEELDAGLRVLDRALP 207




 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 60/141 (42%)

Query: 281 ADMVHRQGGPGVRGGVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQEP 340
           ADMVHRQGGPGVRGGVSA                                      GQEP
Sbjct: 281 ADMVHRQGGPGVRGGVSARPDPGGGHHGLPHPRRELLPRRHHRRRLHHRRPLPRPLGQEP 340

Query: 341 RACSXXXXXXXXXXXXXXXXXXXXXXXQAVXXXXXXXXXXXXXXXXXXXXTDRSVSLLIT 400
           RACS                       QAV                    TDRSVSLLIT
Sbjct: 341 RACSPRQGRRRHCHRPRRRPLPDHRRRQAVLLRHPAPPAAYLLLLRQRRLTDRSVSLLIT 400

Query: 401 CVHASSHLIDRLAASTTDLAC 421
           CVHASSHLIDRLAASTTDLAC
Sbjct: 401 CVHASSHLIDRLAASTTDLAC 421



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,587,522
Number of extensions: 118926
Number of successful extensions: 321
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)