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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0561500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nodulin-like protein 5NG4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.61 (0.0606) R2 : 0.623
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.17 (0.191) R2dE : 0.614 R2E : 0.62
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.209 (0.128) R2dN8 : 0.00286 R2N8 : 0.00868
σ : 1.14
deviance : 597.1
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.59
memory length : 976
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.66
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
579.16 1.13 4.76 -1.67 0.108 6.04 -1.73 -9.48 0.0967 7.67 25.45 970 8.51 --
595.79 1.14 4.59 0.0274 0.107 5.22 -1.73 -- 0.228 8.18 24.65 941 8.85 --
582.13 1.12 4.78 -1.73 0.453 5.63 -- -8.14 -0.0224 5.3 25.33 1012 10.5 --
593.66 1.13 4.59 -0.0111 0.366 5.02 -- -- 0.264 5.28 24.81 980 10.3 --
586.39 1.13 4.73 -1.34 -- 5.7 -- -6.52 0.0268 -- 25.06 1003 9.54 --
1325.95 1.71 4.52 1.27 1.75 -- 1.19 -- 0.624 1.95 -- -- -- --
1331.26 1.71 4.52 1.23 1.76 -- -- -- 0.617 2.05 -- -- -- --
597.11 1.14 4.61 -0.00939 -- 5.18 -- -- 0.205 -- 24.59 974 9.61 --
593.61 1.13 4.59 -- 0.374 5.03 -- -- 0.261 5.6 24.8 978 10.3 --
1516.58 1.82 4.51 1.31 -- -- -- -- 0.658 -- -- -- -- --
1371.28 1.73 4.55 -- 1.78 -- -- -- 0.479 2.07 -- -- -- --
597.1 1.14 4.61 -- -- 5.17 -- -- 0.209 -- 24.59 976 9.66 --
1561.53 1.84 4.54 -- -- -- -- -- 0.513 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 609.78 temperature 25 720 > th dose dependent rect. 17 15
3 616.58 temperature 25 720 > th dose dependent rect. 17 5
7 629.62 temperature 25 720 > th dose dependent sin 12 NA
29 645.66 temperature 30 1440 < th dose independent rect. 17 22
33 647.87 temperature 30 1440 < th dose independent rect. 9 16
34 647.93 temperature 30 1440 < th dose independent rect. 9 20
38 648.07 temperature 30 1440 < th dose independent rect. 13 23
41 648.09 temperature 30 1440 < th dose independent rect. 9 23
45 648.21 temperature 30 1440 < th dose independent rect. 9 10
54 648.74 temperature 30 1440 > th dose independent rect. 17 23
56 649.03 temperature 30 1440 < th dose independent rect. 11 23
57 649.07 temperature 30 1440 < th dose independent rect. 7 18
58 649.13 temperature 30 1440 < th dose independent rect. 7 22
60 649.18 temperature 30 1440 < th dose independent rect. 3 22
74 649.33 temperature 30 1440 < th dose independent rect. 20 23
87 649.40 temperature 30 1440 < th dose independent no NA NA
88 649.40 temperature 30 1440 < th dose independent rect. 7 12
92 649.41 temperature 30 1440 < th dose independent rect. 24 23
111 649.52 temperature 30 1440 < th dose independent rect. 3 16
118 649.54 temperature 30 1440 > th dose independent rect. 9 10
165 650.17 temperature 30 1440 > th dose independent rect. 13 23
167 650.84 temperature 30 1440 > th dose independent rect. 11 23
169 651.41 temperature 30 1440 > th dose independent no NA NA
264 651.87 temperature 30 1440 < th dose independent sin 21 NA
285 652.86 temperature 30 1440 > th dose independent sin 19 NA
388 659.25 temperature 30 1440 < th dose independent rect. 9 6
418 661.33 temperature 30 1440 < th dose independent rect. 20 19
423 661.50 temperature 30 1440 < th dose independent rect. 7 8
425 661.64 temperature 30 1440 < th dose independent rect. 3 12
433 661.85 temperature 30 1440 > th dose independent rect. 9 6
529 664.05 temperature 25 1440 > th dose dependent rect. 16 22
571 664.78 temperature 25 1440 > th dose dependent rect. 4 19
572 664.79 temperature 25 1440 > th dose dependent rect. 6 17
662 667.47 temperature 25 1440 > th dose dependent no NA NA
701 669.62 temperature 25 1440 > th dose dependent rect. 21 23
752 671.73 temperature 25 1440 > th dose dependent sin 18 NA
938 680.84 temperature 30 1440 > th dose dependent rect. 14 1
991 683.90 temperature 30 1440 > th dose dependent rect. 11 5