BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0542600 Os08g0542600|AK058496
         (308 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0542600  HAD-superfamily subfamily IIA hydrolase, hypot...   602   e-173

>Os08g0542600 HAD-superfamily subfamily IIA hydrolase, hypothetical 3 protein
          Length = 308

 Score =  602 bits (1553), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/308 (96%), Positives = 296/308 (96%)

Query: 1   MASAASAPAFERLAGIRALAESGRFKAWFLDQFGVLHDGKKPYPGAVLALEKLAEKGAKM 60
           MASAASAPAFERLAGIRALAESGRFKAWFLDQFGVLHDGKKPYPGAVLALEKLAEKGAKM
Sbjct: 1   MASAASAPAFERLAGIRALAESGRFKAWFLDQFGVLHDGKKPYPGAVLALEKLAEKGAKM 60

Query: 61  XXXXXXXXXXXXTMEKLESLGFDPSCFLRAITSGELTHQYLQKRDDPWFAALGRKCVHLT 120
                       TMEKLESLGFDPSCFLRAITSGELTHQYLQKRDDPWFAALGRKCVHLT
Sbjct: 61  VIISNSSRRSSVTMEKLESLGFDPSCFLRAITSGELTHQYLQKRDDPWFAALGRKCVHLT 120

Query: 121 WGNRGAISLEGLGLQVVSNVEEAEFILAHGTEALGLPSGDPLPKSLEELEQVLMLCLEKR 180
           WGNRGAISLEGLGLQVVSNVEEAEFILAHGTEALGLPSGDPLPKSLEELEQVLMLCLEKR
Sbjct: 121 WGNRGAISLEGLGLQVVSNVEEAEFILAHGTEALGLPSGDPLPKSLEELEQVLMLCLEKR 180

Query: 181 LPMVVANPDYVTVEARDLRVMPGTLAAKYESLGGEVKWMGKPDKVIYTSAMSLAGVNPHE 240
           LPMVVANPDYVTVEARDLRVMPGTLAAKYESLGGEVKWMGKPDKVIYTSAMSLAGVNPHE
Sbjct: 181 LPMVVANPDYVTVEARDLRVMPGTLAAKYESLGGEVKWMGKPDKVIYTSAMSLAGVNPHE 240

Query: 241 CITVGDSLHHDIKGANASRVASAFITGGIHATELGLNEIGEIAGEDAIDSLCRKHGSYPT 300
           CITVGDSLHHDIKGANASRVASAFITGGIHATELGLNEIGEIAGEDAIDSLCRKHGSYPT
Sbjct: 241 CITVGDSLHHDIKGANASRVASAFITGGIHATELGLNEIGEIAGEDAIDSLCRKHGSYPT 300

Query: 301 YVLPSFTW 308
           YVLPSFTW
Sbjct: 301 YVLPSFTW 308



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,443,220
Number of extensions: 418919
Number of successful extensions: 864
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)