Os08g0542600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily subfamily IIA hydrolase, hypothetical 3 protein.
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Os08g0542600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily subfamily IIA hydrolase, hypothetical 3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.29 | 0.217 | 11 | -1.06 | 0.506 | -0.556 | -0.529 | -0.447 | -0.507 | 21.3 | 28.5 | 850 | -- | -- |
| 21.44 | 0.216 | 10.9 | -1.12 | 0.505 | -0.588 | -0.495 | -- | -0.508 | 21.3 | 28.5 | 852 | -- | -- |
| 22.07 | 0.219 | 11 | -1.06 | 0.519 | -0.541 | -- | -0.251 | -0.509 | 21.2 | 28.07 | 849 | -- | -- |
| 22.02 | 0.219 | 11 | -1.11 | 0.501 | -0.569 | -- | -- | -0.52 | 21.2 | 27.91 | 848 | -- | -- |
| 31.01 | 0.259 | 11 | -1.32 | -- | -0.821 | -- | 0.357 | -0.714 | -- | 26 | 691 | -- | -- |
| 29.64 | 0.255 | 11 | -0.995 | 0.722 | -- | -0.321 | -- | -0.463 | 21 | -- | -- | -- | -- |
| 29.99 | 0.256 | 11 | -0.984 | 0.724 | -- | -- | -- | -0.462 | 21 | -- | -- | -- | -- |
| 31.24 | 0.26 | 11 | -1.22 | -- | -0.785 | -- | -- | -0.691 | -- | 26.08 | 678 | -- | -- |
| 53.55 | 0.341 | 10.9 | -- | 0.609 | -0.254 | -- | -- | -0.387 | 21.4 | 27.34 | 563 | -- | -- |
| 60.06 | 0.362 | 10.9 | -0.983 | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
| 55.5 | 0.348 | 10.9 | -- | 0.725 | -- | -- | -- | -0.353 | 20.9 | -- | -- | -- | -- |
| 68.8 | 0.386 | 10.9 | -- | -- | -0.71 | -- | -- | -0.417 | -- | 28.2 | 757 | -- | -- |
| 85.54 | 0.432 | 10.9 | -- | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 27 | 21.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 36 | 21.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 40 | 21.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 43 | 21.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 44 | 21.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 48 | 21.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 50 | 21.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 63 | 21.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 90 | 21.57 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 176 | 21.66 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 182 | 21.67 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 387 | 21.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 400 | 21.89 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 497 | 21.96 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 630 | 22.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 672 | 22.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 729 | 22.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 735 | 22.12 | humidity | 60 | 1440 | > th | dose dependent | sin | 20 | NA |
| 747 | 22.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 815 | 22.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 845 | 22.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 869 | 22.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 888 | 22.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 941 | 22.25 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 18 |