BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0532800 Os08g0532800|AK061214
         (179 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0532800  Plant lipid transfer/seed storage/trypsin-alph...   231   2e-61

>Os08g0532800 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 179

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 116/161 (72%)

Query: 1   MAAWRGXXXXXXXXXXXXXXXXXXXXXXQSKCQQDFTKLTDCMDYATGHEEAPSSTCCGD 60
           MAAWRG                      QSKCQQDFTKLTDCMDYATGHEEAPSSTCCGD
Sbjct: 1   MAAWRGLALAAVVAWCVAAAAAAPDAALQSKCQQDFTKLTDCMDYATGHEEAPSSTCCGD 60

Query: 61  MSATQQARPECLCYIIQQVHGGRNEVQSLGLRFDRLLAMPTACKLPNANVSLCINLLHLT 120
           MSATQQARPECLCYIIQQVHGGRNEVQSLGLRFDRLLAMPTACKLPNANVSLCINLLHLT
Sbjct: 61  MSATQQARPECLCYIIQQVHGGRNEVQSLGLRFDRLLAMPTACKLPNANVSLCINLLHLT 120

Query: 121 PSSPDYAVFANXXXXXXXXXXXXXXXXXXXXXXXFKVQAGL 161
           PSSPDYAVFAN                       FKVQAGL
Sbjct: 121 PSSPDYAVFANASKAAATTPSSTTPGAAAATAGGFKVQAGL 161



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,198,262
Number of extensions: 139425
Number of successful extensions: 402
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)