BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0524000 Os08g0524000|AK067169
         (256 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0524000  Conserved hypothetical protein                      488   e-138
AK108106                                                           70   2e-12

>Os08g0524000 Conserved hypothetical protein
          Length = 256

 Score =  488 bits (1256), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/256 (92%), Positives = 238/256 (92%)

Query: 1   MDEWVRQAEVWVGQAERWIRQQPPEQXXXXXXXXXXXXXXXXXXSCLKSSKANTIVLSGL 60
           MDEWVRQAEVWVGQAERWIRQQPPEQ                  SCLKSSKANTIVLSGL
Sbjct: 1   MDEWVRQAEVWVGQAERWIRQQPPEQVYVAVAVVAVTVLLLVAVSCLKSSKANTIVLSGL 60

Query: 61  SGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGHARLKP 120
           SGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGHARLKP
Sbjct: 61  SGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGHARLKP 120

Query: 121 KLDEVLPQAAGIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFCNKTDKVTA 180
           KLDEVLPQAAGIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFCNKTDKVTA
Sbjct: 121 KLDEVLPQAAGIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFCNKTDKVTA 180

Query: 181 HSKEFIKKQLEKELNKLRESRNAISSADITDEVKLGNPGEAFNFSQCQNKVTVTEGAGLT 240
           HSKEFIKKQLEKELNKLRESRNAISSADITDEVKLGNPGEAFNFSQCQNKVTVTEGAGLT
Sbjct: 181 HSKEFIKKQLEKELNKLRESRNAISSADITDEVKLGNPGEAFNFSQCQNKVTVTEGAGLT 240

Query: 241 GNVSAVEEFIREYVKA 256
           GNVSAVEEFIREYVKA
Sbjct: 241 GNVSAVEEFIREYVKA 256



>AK108106 
          Length = 398

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 12/111 (10%)

Query: 51  KANTIVLSGLSGSGKTILFYQLRDGSTHQGTVTSM--EQNNDTFVLHSELERRGKVKPVH 108
           +A+T+VL GLS +GKT LF  L     +Q T  ++  ++ +   V  S L+  G +KPV 
Sbjct: 78  RASTVVLVGLSETGKTSLFSSL----VYQTTPATLPSQKLSQGIVAPSSLD--GGLKPVT 131

Query: 109 VVDVPGHARLKPKLDEVLPQAAGIVYVVDA----QDFLSTMHAAAEYLYDI 155
           +VDVPGHARL+P +DE L QA G+V  VDA    +  LS+    AE + D+
Sbjct: 132 LVDVPGHARLRPLVDEHLSQADGLVICVDAVMASKTSLSSRPGDAESITDV 182



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,757,519
Number of extensions: 279649
Number of successful extensions: 788
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)