Os08g0524000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0524000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.66 | 0.243 | 10.3 | -0.277 | 0.0644 | 0.724 | -0.742 | -0.754 | 0.00926 | 6.5 | 18.8 | 3943 | -- | -- |
| 27.07 | 0.242 | 10.2 | -0.103 | 0.0643 | 0.756 | -0.731 | -- | 0.0519 | 6.32 | 17.49 | 3962 | -- | -- |
| 27.96 | 0.246 | 10.3 | -0.288 | 0.0668 | 0.72 | -- | -0.753 | 0.0118 | 4.54 | 18.64 | 3988 | -- | -- |
| 28.38 | 0.248 | 10.2 | -0.101 | 0.0635 | 0.741 | -- | -- | 0.0622 | 4.72 | 17.7 | 3974 | -- | -- |
| 28.21 | 0.247 | 10.3 | -0.291 | -- | 0.724 | -- | -0.763 | 0.0101 | -- | 18.7 | 4013 | -- | -- |
| 39.26 | 0.294 | 10.2 | 0.246 | 0.0853 | -- | -0.736 | -- | 0.216 | 5.96 | -- | -- | -- | -- |
| 40.12 | 0.297 | 10.2 | 0.238 | 0.118 | -- | -- | -- | 0.218 | 2.85 | -- | -- | -- | -- |
| 28.61 | 0.249 | 10.2 | -0.0995 | -- | 0.746 | -- | -- | 0.0641 | -- | 17.74 | 3994 | -- | -- |
| 28.57 | 0.249 | 10.2 | -- | 0.0681 | 0.69 | -- | -- | 0.0821 | 4.55 | 17.96 | 3949 | -- | -- |
| 40.94 | 0.299 | 10.2 | 0.243 | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
| 41.61 | 0.302 | 10.2 | -- | 0.123 | -- | -- | -- | 0.191 | 2.87 | -- | -- | -- | -- |
| 28.81 | 0.25 | 10.2 | -- | -- | 0.698 | -- | -- | 0.0824 | -- | 18 | 3984 | -- | -- |
| 42.49 | 0.304 | 10.2 | -- | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 25.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 21 | 25.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 87 | 26.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 88 | 26.36 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 97 | 26.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 100 | 26.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 106 | 26.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 107 | 26.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 108 | 26.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 124 | 26.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 133 | 26.64 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 3 |
| 137 | 26.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 201 | 26.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 248 | 26.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 280 | 26.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 305 | 26.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 417 | 27.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 486 | 27.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 493 | 27.05 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 510 | 27.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 550 | 27.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 553 | 27.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 573 | 27.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 628 | 27.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 694 | 27.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 16 |
| 780 | 27.19 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 810 | 27.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 833 | 27.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 850 | 27.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 872 | 27.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 914 | 27.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 923 | 27.25 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 946 | 27.26 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |