BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0521600 Os08g0521600|AK108208
         (189 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0521600  Similar to Dehydration responsive element bind...   236   6e-63

>Os08g0521600 Similar to Dehydration responsive element binding protein 2C
           (DREB2C protein)
          Length = 189

 Score =  236 bits (603), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 128/189 (67%)

Query: 1   MVPPAAHAPKNXXXXXXXXXXXXXXAAEIRVPRGHRAAARLWIGTFPSPXXXXXXXXXXX 60
           MVPPAAHAPKN              AAEIRVPRGHRAAARLWIGTFPSP           
Sbjct: 1   MVPPAAHAPKNLGLRGVRRRLWGRWAAEIRVPRGHRAAARLWIGTFPSPAAAALAYDAAL 60

Query: 61  XCFHGGAPPGNRAFNFPHAPRLRIDDRRRHALTPGHVRAIAERYAHDVGSVLFRXXXXXX 120
            CFHGGAPPGNRAFNFPHAPRLRIDDRRRHALTPGHVRAIAERYAHDVGSVLFR      
Sbjct: 61  YCFHGGAPPGNRAFNFPHAPRLRIDDRRRHALTPGHVRAIAERYAHDVGSVLFRPLPPPP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYCNEPDTTTDEDVMAAADRLLSMDIEEVAA 180
                                        YYCNEPDTTTDEDVMAAADRLLSMDIEEVAA
Sbjct: 121 PPVAAAAVPVFAAPAPPMAPAPANHAADPYYCNEPDTTTDEDVMAAADRLLSMDIEEVAA 180

Query: 181 LIAIVQQGE 189
           LIAIVQQGE
Sbjct: 181 LIAIVQQGE 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,252,629
Number of extensions: 174927
Number of successful extensions: 291
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)