BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0518000 Os08g0518000|J065168C22
         (173 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0518000  Conserved hypothetical protein                       85   3e-17

>Os08g0518000 Conserved hypothetical protein
          Length = 173

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 135 TRCQGQVTSPASPPPPRYHLLVLRNRLCRQRCNVAAGES 173
           TRCQGQVTSPASPPPPRYHLLVLRNRLCRQRCNVAAGES
Sbjct: 135 TRCQGQVTSPASPPPPRYHLLVLRNRLCRQRCNVAAGES 173




 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 41/65 (63%)

Query: 1  GGNNATIGSGVGRMXXXXXXXXXXXXXFGAKTPRLGPSPSPISTFXXXXXXXXXXXGSTP 60
          GGNNATIGSGVGRM             FGAKTPRLGPSPSPISTF           GSTP
Sbjct: 1  GGNNATIGSGVGRMATATSASASSAAAFGAKTPRLGPSPSPISTFARPPLAPRPPAGSTP 60

Query: 61 ASTST 65
          ASTST
Sbjct: 61 ASTST 65



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,840,170
Number of extensions: 120826
Number of successful extensions: 595
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)