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Os08g0518000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.4 (0.0373) R2 : 0.497
β1 : -1.41 (0.137) R2dD : 0.119 R2D : 0.0264
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.04 (0.104) R2dE : 0.433 R2E : 0.342
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.51 (0.08) R2dN8 : 0.0653 R2N8 : -0.00527
σ : 0.696
deviance : 223.47
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C
peak time of C : --
E
wheather : temperature
threshold : 22.02
memory length : 696
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 2.96

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.61 0.685 6.4 -1.62 0.546 2.23 1.45 -0.715 -0.511 9.57 20.18 732 17 2.78
212.9 0.68 6.38 -1.48 0.504 2.17 1.64 -- -0.495 9.46 20.7 734 16.9 2.83
219.29 0.69 6.4 -1.63 0.632 2.3 -- -1.26 -0.461 9.42 19.88 733 16.9 2.48
220.6 0.692 6.37 -1.42 0.353 2.12 -- -- -0.462 9.11 21.41 705 17.4 2.84
228.5 0.704 6.38 -1.49 -- 2.23 -- -1.15 -0.417 -- 21.29 711 17.3 3.31
338.7 0.863 6.38 -1.11 1.09 -- -0.583 -- -0.373 2.26 -- -- -- --
339.89 0.863 6.37 -1.1 1.1 -- -- -- -0.37 2.38 -- -- -- --
223.47 0.696 6.4 -1.41 -- 2.04 -- -- -0.51 -- 22.02 696 17.6 2.96
271.25 0.767 6.36 -- 0.272 1.98 -- -- -0.371 8.92 21.68 696 17.5 2.78
411.06 0.947 6.37 -1.05 -- -- -- -- -0.343 -- -- -- -- --
371.52 0.902 6.35 -- 1.08 -- -- -- -0.248 2.37 -- -- -- --
273.3 0.77 6.37 -- -- 1.9 -- -- -0.382 -- 21.9 686 17.8 2.76
440.09 0.979 6.34 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.19 temperature 20 720 > th dose dependent rect. 17 3
54 231.93 temperature 25 720 > th dose independent rect. 17 3
72 234.73 temperature 25 720 > th dose independent rect. 18 1
73 234.79 temperature 25 720 > th dose independent rect. 16 6
74 234.84 temperature 25 720 > th dose independent rect. 16 8
89 236.26 temperature 30 720 < th dose dependent rect. 15 9
93 236.51 temperature 10 270 > th dose dependent rect. 15 13
130 239.44 temperature 25 720 < th dose independent rect. 15 9
164 242.24 temperature 25 720 > th dose dependent sin 13 NA
183 243.34 temperature 30 90 < th dose dependent rect. 19 8
207 244.42 temperature 20 720 > th dose dependent sin 16 NA
225 245.77 temperature 10 720 > th dose dependent sin 17 NA
272 247.93 temperature 30 10 < th dose dependent rect. 19 7
291 248.49 temperature 30 10 < th dose dependent rect. 16 10
325 249.92 temperature 10 270 > th dose dependent sin 14 NA
353 250.64 temperature 30 720 < th dose dependent rect. 19 2
372 251.16 temperature 30 270 < th dose dependent sin 15 NA
375 251.18 temperature 10 720 > th dose dependent rect. 10 18
405 251.97 temperature 25 720 > th dose independent sin 16 NA
421 252.39 temperature 30 720 < th dose dependent sin 18 NA
455 253.18 temperature 20 90 > th dose independent rect. 17 12
477 253.61 temperature 20 720 > th dose dependent rect. 11 12
485 253.82 temperature 20 720 > th dose dependent rect. 11 14
508 254.16 radiation 1 720 > th dose dependent rect. 18 1
522 254.26 temperature 25 10 < th dose dependent sin 14 NA
533 254.46 temperature 25 720 < th dose independent sin 17 NA
583 255.25 temperature 10 720 > th dose dependent rect. 9 14
803 258.59 radiation 1 720 > th dose independent rect. 18 1
853 259.41 temperature 25 720 > th dose independent rect. 11 13
976 260.77 radiation 1 720 > th dose independent rect. 17 12