BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0511800 Os08g0511800|AK063264
         (117 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0511800  Conserved hypothetical protein                      174   1e-44
Os09g0491692  Lambda repressor-like, DNA-binding domain cont...   169   6e-43

>Os08g0511800 Conserved hypothetical protein
          Length = 117

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 92/117 (78%)

Query: 1   MSVRIKAVVDRFVKELKEALDADIQDRIMKEREMQSYIXXXXXXXXXXXXXWKAELSXXX 60
           MSVRIKAVVDRFVKELKEALDADIQDRIMKEREMQSYI             WKAELS   
Sbjct: 1   MSVRIKAVVDRFVKELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  XXXXXXXXXLKIERENLEKEKSVLMGTASSQDNQDGALEITVSGEKYRCLRFSKAKK 117
                    LKIERENLEKEKSVLMGTASSQDNQDGALEITVSGEKYRCLRFSKAKK
Sbjct: 61  AEIARQEARLKIERENLEKEKSVLMGTASSQDNQDGALEITVSGEKYRCLRFSKAKK 117



>Os09g0491692 Lambda repressor-like, DNA-binding domain containing protein
          Length = 117

 Score =  169 bits (427), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 92/117 (78%)

Query: 1   MSVRIKAVVDRFVKELKEALDADIQDRIMKEREMQSYIXXXXXXXXXXXXXWKAELSXXX 60
           MSVRIKAVVDRFVKEL+EALDADIQDR+MKEREMQSYI             WKAELS   
Sbjct: 1   MSVRIKAVVDRFVKELQEALDADIQDRVMKEREMQSYIQEREREVAEREAAWKAELSRRE 60

Query: 61  XXXXXXXXXLKIERENLEKEKSVLMGTASSQDNQDGALEITVSGEKYRCLRFSKAKK 117
                    LK+E+ENLEKEKSVLMGTAS+QDNQDGALEITVSGEKYRCLRFSKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,223,283
Number of extensions: 48352
Number of successful extensions: 124
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)