Os08g0511800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0511800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.45 | 0.505 | 8.01 | 0.858 | 1.39 | -0.532 | -0.294 | -1.76 | -0.341 | 21.9 | 29.31 | 112 | -- | -- |
| 117.82 | 0.506 | 8.04 | 0.694 | 1.42 | -0.582 | -0.336 | -- | -0.382 | 21.7 | 29.3 | 106 | -- | -- |
| 115.73 | 0.501 | 8.01 | 0.873 | 1.4 | -0.535 | -- | -1.74 | -0.344 | 22 | 29.22 | 112 | -- | -- |
| 118.17 | 0.506 | 8.04 | 0.71 | 1.45 | -0.596 | -- | -- | -0.379 | 21.9 | 29.4 | 106 | -- | -- |
| 203.39 | 0.664 | 8 | 0.883 | -- | -1.13 | -- | -1.39 | -0.384 | -- | 28.43 | 705 | -- | -- |
| 132.62 | 0.54 | 8.03 | 0.75 | 1.42 | -- | -0.486 | -- | -0.364 | 21.1 | -- | -- | -- | -- |
| 133.43 | 0.541 | 8.03 | 0.766 | 1.42 | -- | -- | -- | -0.364 | 21.2 | -- | -- | -- | -- |
| 200.63 | 0.66 | 8.02 | 0.528 | -- | -1.19 | -- | -- | -0.492 | -- | 28.1 | 776 | -- | -- |
| 128.84 | 0.529 | 8.05 | -- | 1.42 | -0.74 | -- | -- | -0.464 | 22.1 | 29.3 | 106 | -- | -- |
| 249.71 | 0.738 | 8 | 0.771 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 148.9 | 0.571 | 8.05 | -- | 1.42 | -- | -- | -- | -0.45 | 21.2 | -- | -- | -- | -- |
| 206.64 | 0.67 | 8.04 | -- | -- | -1.35 | -- | -- | -0.576 | -- | 28.2 | 788 | -- | -- |
| 265.39 | 0.76 | 8.02 | -- | -- | -- | -- | -- | -0.457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.24 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 2 | 104.76 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |
| 5 | 105.58 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 13 |
| 6 | 105.81 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 20 |
| 11 | 105.99 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 13 |
| 49 | 109.44 | radiation | 40 | 10 | < th | dose independent | rect. | 7 | 17 |
| 50 | 109.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 55 | 109.75 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 18 |
| 57 | 109.84 | humidity | 60 | 270 | > th | dose independent | rect. | 4 | 17 |
| 60 | 109.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 77 | 110.51 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 81 | 110.63 | temperature | 30 | 90 | < th | dose independent | sin | 23 | NA |
| 105 | 111.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 111 | 111.16 | temperature | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 155 | 111.82 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 7 |
| 160 | 111.92 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 174 | 112.11 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 19 |
| 178 | 112.16 | humidity | 60 | 270 | > th | dose independent | rect. | 4 | 13 |
| 180 | 112.19 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 21 |
| 182 | 112.22 | humidity | 50 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 217 | 112.87 | humidity | 50 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 230 | 113.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 9 |
| 255 | 113.29 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 257 | 113.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 21 |
| 271 | 113.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 325 | 113.86 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 15 |
| 345 | 114.02 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 348 | 114.06 | humidity | 70 | 90 | > th | dose independent | sin | 20 | NA |
| 355 | 114.08 | radiation | 30 | 720 | < th | dose independent | rect. | 20 | 14 |
| 379 | 114.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 18 |
| 381 | 114.30 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 7 |
| 389 | 114.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 415 | 114.51 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 453 | 114.71 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 484 | 114.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 12 |
| 534 | 115.12 | humidity | 50 | 90 | > th | dose dependent | sin | 21 | NA |
| 610 | 115.44 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 10 |
| 628 | 115.52 | wind | 1 | 90 | > th | dose independent | rect. | 6 | 18 |
| 632 | 115.57 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 15 |
| 646 | 115.62 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 654 | 115.64 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 657 | 115.65 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 9 |
| 684 | 115.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 685 | 115.73 | radiation | 40 | 30 | < th | dose dependent | rect. | 7 | 17 |
| 697 | 115.79 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 723 | 115.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 22 |
| 747 | 115.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 766 | 116.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 767 | 116.06 | radiation | 10 | 30 | < th | dose dependent | sin | 6 | NA |
| 775 | 116.09 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 13 |
| 776 | 116.09 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 851 | 116.30 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 854 | 116.30 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 6 | 17 |
| 871 | 116.34 | humidity | 90 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 886 | 116.37 | radiation | 10 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 891 | 116.38 | humidity | 60 | 90 | > th | dose independent | rect. | 6 | 9 |
| 996 | 116.57 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 12 |