BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0511400 Os08g0511400|AK069673
         (173 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0511400  Conserved hypothetical protein                      257   2e-69
Os02g0715300  Conserved hypothetical protein                       77   9e-15

>Os08g0511400 Conserved hypothetical protein
          Length = 173

 Score =  257 bits (657), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 132/173 (76%)

Query: 1   MATDAILETIKPRRSAERENLPVTNATGKGRGGDHLIGLRRRMSSFSVRIQPLMSSXXXX 60
           MATDAILETIKPRRSAERENLPVTNATGKGRGGDHLIGLRRRMSSFSVRIQPLMSS    
Sbjct: 1   MATDAILETIKPRRSAERENLPVTNATGKGRGGDHLIGLRRRMSSFSVRIQPLMSSAGAG 60

Query: 61  XXFRRATSMPSVKALXXXXXXXXXXXXXXXXXXMNRRPAFARDLEMNDDEAAALGCHCRG 120
             FRRATSMPSVKAL                  MNRRPAFARDLEMNDDEAAALGCHCRG
Sbjct: 61  GAFRRATSMPSVKALAAQAGAVRRWWGWGLGWVMNRRPAFARDLEMNDDEAAALGCHCRG 120

Query: 121 TWRHVFYXXXXXXXXXXXXXXXXXSAHDFRYDSVSYAHNFDNGDAAAAARPEP 173
           TWRHVFY                 SAHDFRYDSVSYAHNFDNGDAAAAARPEP
Sbjct: 121 TWRHVFYRLRAGARRLLGRDGLPLSAHDFRYDSVSYAHNFDNGDAAAAARPEP 173



>Os02g0715300 Conserved hypothetical protein
          Length = 183

 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 34  DHLIGLRRRMSSFSVRIQPLMSSXXXXXXFRRATSMPSVKALXXXXXXXXXXXXXXXXXX 93
            HL+GLR+R+SSFS +IQP+ SS      FRR+ S PS+ A                   
Sbjct: 41  SHLMGLRKRLSSFSDKIQPI-SSASAEWAFRRSKSAPSLGAFAGGPLKRWWDWGVGWL-- 97

Query: 94  MNRRPAFARDLEMNDDEAAALGCHCRGTWRHVFY 127
           M+++P FA DLEMN++E AALG   RG+W H+ Y
Sbjct: 98  MSKKPGFATDLEMNEEEVAALGRGSRGSWGHILY 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,768,921
Number of extensions: 134099
Number of successful extensions: 377
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)