FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0511400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.78 (0.0702) R2 : 0.464
β1 : -3.81 (0.263) R2dD : 0.268 R2D : 0.155
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.39 (0.214) R2dE : 0.31 R2E : 0.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.15) R2dN8 : 0.0045 R2N8 : 0.00967
σ : 1.31
deviance : 795.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.31
memory length : 1029
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.75
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
772.68 1.31 4.94 -5.29 0.361 4.05 1.92 -8.16 0.087 5.29 26.7 1066 8.14 --
781.83 1.3 4.76 -3.8 0.374 3.24 1.77 -- 0.315 5.65 26.6 991 7.69 --
780.94 1.3 4.92 -5.14 0.411 4.05 -- -7.39 0.134 6.17 26.7 1057 8.07 --
788.33 1.31 4.77 -3.75 0.37 3.32 -- -- 0.279 6.28 26.51 1009 7.9 --
787.21 1.31 4.93 -5.05 -- 4.07 -- -6.79 0.0851 -- 26.44 1057 7.86 --
1151.73 1.59 4.79 -2.97 1.04 -- 2.57 -- 0.144 3.7 -- -- -- --
1171.28 1.6 4.8 -3.01 1.05 -- -- -- 0.129 3.45 -- -- -- --
795.22 1.31 4.78 -3.81 -- 3.39 -- -- 0.245 -- 26.31 1029 7.75 --
1147.43 1.58 4.66 -- 0.472 2.72 -- -- 0.767 5.61 27.12 976 6.96 --
1232.53 1.64 4.8 -2.96 -- -- -- -- 0.157 -- -- -- -- --
1409.45 1.76 4.73 -- 0.986 -- -- -- 0.464 3.47 -- -- -- --
1156.79 1.58 4.68 -- -- 2.82 -- -- 0.72 -- 26.57 972 6.96 --
1463.96 1.79 4.73 -- -- -- -- -- 0.486 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 817.21 temperature 25 720 > th dose dependent rect. 18 14
3 819.88 temperature 25 720 > th dose dependent rect. 17 7
19 831.15 humidity 70 720 < th dose independent rect. 17 14
20 831.25 humidity 70 720 < th dose independent rect. 17 3
48 836.23 humidity 70 720 > th dose independent rect. 18 9
53 838.93 temperature 30 1440 > th dose dependent sin 13 NA
60 840.19 temperature 30 1440 > th dose dependent rect. 14 5
106 841.57 temperature 30 1440 > th dose independent sin 13 NA
129 842.25 humidity 80 720 < th dose dependent rect. 18 1
132 842.79 temperature 30 1440 < th dose independent sin 13 NA
144 844.03 temperature 30 1440 > th dose independent rect. 15 4
193 844.96 humidity 80 1440 < th dose dependent rect. 16 3
196 845.06 humidity 70 1440 < th dose dependent rect. 16 15
218 846.25 temperature 30 1440 < th dose independent rect. 15 12
250 846.43 temperature 30 1440 < th dose independent rect. 15 10
252 846.47 humidity 70 720 > th dose independent rect. 17 15
255 846.55 temperature 30 1440 < th dose independent rect. 15 16
259 846.71 temperature 30 1440 < th dose independent rect. 15 7
261 846.73 temperature 30 1440 < th dose independent rect. 15 5
273 847.40 humidity 70 720 > th dose independent sin 12 NA
334 848.82 temperature 30 1440 > th dose dependent no NA NA
471 850.73 temperature 25 720 > th dose dependent rect. 21 1
492 851.35 temperature 30 1440 < th dose independent rect. 15 19
507 851.51 temperature 30 1440 > th dose independent rect. 15 19
537 852.84 temperature 30 1440 < th dose independent rect. 15 21
542 853.01 humidity 70 720 < th dose independent sin 12 NA
621 854.24 temperature 30 1440 < th dose independent rect. 9 18
623 854.33 temperature 30 1440 < th dose independent rect. 9 16
624 854.34 temperature 30 1440 < th dose independent rect. 9 22
635 854.44 temperature 30 1440 < th dose independent rect. 9 13
650 854.47 temperature 30 1440 < th dose independent rect. 9 11
702 855.31 temperature 30 1440 > th dose independent rect. 9 10
720 855.63 radiation 30 1440 > th dose independent rect. 16 16
725 855.78 humidity 70 1440 > th dose independent rect. 18 2
763 856.13 temperature 30 1440 > th dose independent rect. 15 23
784 856.44 temperature 30 1440 < th dose independent rect. 17 23
790 856.76 temperature 30 1440 > th dose independent rect. 11 8
805 856.79 temperature 30 1440 < th dose independent rect. 6 21
825 856.88 temperature 30 1440 < th dose independent rect. 6 19
833 856.94 temperature 30 1440 < th dose independent rect. 2 23
834 856.95 temperature 30 1440 > th dose independent rect. 13 23
841 856.99 temperature 30 1440 < th dose independent rect. 6 16
844 856.99 temperature 30 1440 < th dose independent rect. 23 23
850 857.02 temperature 30 1440 < th dose independent rect. 6 14
852 857.02 temperature 30 1440 < th dose independent rect. 23 21
854 857.03 temperature 30 1440 < th dose independent no NA NA
860 857.03 temperature 30 1440 < th dose independent rect. 21 23
869 857.06 temperature 30 1440 < th dose independent rect. 2 20
973 857.76 radiation 30 1440 > th dose independent rect. 7 1