BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0505200 Os08g0505200|AK067190
         (687 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0505200  tRNA-binding arm domain containing protein         1347   0.0  
Os09g0487200  Conserved hypothetical protein                      861   0.0  

>Os08g0505200 tRNA-binding arm domain containing protein
          Length = 687

 Score = 1347 bits (3487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/687 (95%), Positives = 659/687 (95%)

Query: 1   MGAKDNGEVRDEKGVGSDYEPARVSGVSKKLMRKDTRENSPRMAKSSGSRQVQNKLQHKA 60
           MGAKDNGEVRDEKGVGSDYEPARVSGVSKKLMRKDTRENSPRMAKSSGSRQVQNKLQHKA
Sbjct: 1   MGAKDNGEVRDEKGVGSDYEPARVSGVSKKLMRKDTRENSPRMAKSSGSRQVQNKLQHKA 60

Query: 61  SNNIQSRSPKPRKVVNAAKSAEVRRSDTVRVPSRAPSELSEETDDIVSEAGTVDDSKGNE 120
           SNNIQSRSPKPRKVVNAAKSAEVRRSDTVRVPSRAPSELSEETDDIVSEAGTVDDSKGNE
Sbjct: 61  SNNIQSRSPKPRKVVNAAKSAEVRRSDTVRVPSRAPSELSEETDDIVSEAGTVDDSKGNE 120

Query: 121 EAKEIDVLDEAPHCDQSTGTDDEIPEIEEKIVDDEKPVVYQRNEELQSKIDKLEQELREV 180
           EAKEIDVLDEAPHCDQSTGTDDEIPEIEEKIVDDEKPVVYQRNEELQSKIDKLEQELREV
Sbjct: 121 EAKEIDVLDEAPHCDQSTGTDDEIPEIEEKIVDDEKPVVYQRNEELQSKIDKLEQELREV 180

Query: 181 AALEVSLYSVLPEHGSSAHKLHTPARRLSRMYIHASKFWSSDKIASVAKSTVSGLVLVAK 240
           AALEVSLYSVLPEHGSSAHKLHTPARRLSRMYIHASKFWSSDKIASVAKSTVSGLVLVAK
Sbjct: 181 AALEVSLYSVLPEHGSSAHKLHTPARRLSRMYIHASKFWSSDKIASVAKSTVSGLVLVAK 240

Query: 241 SCSNDASRLTFWLSNTVVLREIIAQTIGISCQSSSTITAINMNGSAKSLDGRSMPMLWTN 300
           SCSNDASRLTFWLSNTVVLREIIAQTIGISCQSSSTITAINMNGSAKSLDGRSMPMLWTN
Sbjct: 241 SCSNDASRLTFWLSNTVVLREIIAQTIGISCQSSSTITAINMNGSAKSLDGRSMPMLWTN 300

Query: 301 SSSGKQTKFTGMQVPDDWHETSTLLAALEKIESWIFSRIVETVWWQALTPHMQTPVEGSS 360
           SSSGKQTKFTGMQVPDDWHETSTLLAALEKIESWIFSRIVETVWWQALTPHMQTPVEGSS
Sbjct: 301 SSSGKQTKFTGMQVPDDWHETSTLLAALEKIESWIFSRIVETVWWQALTPHMQTPVEGSS 360

Query: 361 TPKTGRVLGPSLGDQQQGTFSVNLWKAAFHDAFNRICPLRAGGHECGCLPVLAKLVMEQC 420
           TPKTGRVLGPSLGDQQQGTFSVNLWKAAFHDAFNRICPLRAGGHECGCLPVLAKLVMEQC
Sbjct: 361 TPKTGRVLGPSLGDQQQGTFSVNLWKAAFHDAFNRICPLRAGGHECGCLPVLAKLVMEQC 420

Query: 421 VGRLDVAMFNAILRESASEIPTDPISDPIVDPKVLPIPAGDLSFGSGAQLKNSIGNWSRW 480
           VGRLDVAMFNAILRESASEIPTDPISDPIVDPKVLPIPAGDLSFGSGAQLKNSIGNWSRW
Sbjct: 421 VGRLDVAMFNAILRESASEIPTDPISDPIVDPKVLPIPAGDLSFGSGAQLKNSIGNWSRW 480

Query: 481 LTDNFGIDADDSEEDGTDTGSERSAAESKSFQLLNELSDLLMLPKDMLIEKSIRKEICPS 540
           LTDNFGIDADDSEEDGTDTGSERSAAESKSFQLLNELSDLLMLPKDMLIEKSIRKEICPS
Sbjct: 481 LTDNFGIDADDSEEDGTDTGSERSAAESKSFQLLNELSDLLMLPKDMLIEKSIRKEICPS 540

Query: 541 IGLPLVTRILCNFTPDEFCPDPVPSIVXXXXXXXXXXXRCTDKSATSAFPCIAAPVVYRP 600
           IGLPLVTRILCNFTPDEFCPDPVPSIV           RCTDKSATSAFPCIAAPVVYRP
Sbjct: 541 IGLPLVTRILCNFTPDEFCPDPVPSIVLEELNSESLLERCTDKSATSAFPCIAAPVVYRP 600

Query: 601 PSLLDVAEKVADTGGNAKLDRRASMVQRRGYTXXXXXXXXXXXXXXXXXKSAPPLLSKGS 660
           PSLLDVAEKVADTGGNAKLDRRASMVQRRGYT                 KSAPPLLSKGS
Sbjct: 601 PSLLDVAEKVADTGGNAKLDRRASMVQRRGYTSDDDLDDLDSPLASLIDKSAPPLLSKGS 660

Query: 661 AHFTAQRGVSMENARYTFLREVWLERQ 687
           AHFTAQRGVSMENARYTFLREVWLERQ
Sbjct: 661 AHFTAQRGVSMENARYTFLREVWLERQ 687



>Os09g0487200 Conserved hypothetical protein
          Length = 780

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/777 (58%), Positives = 534/777 (68%), Gaps = 91/777 (11%)

Query: 1   MGAKDNGEVRDE------------KGVGSDYEPAR-------------------VSGVSK 29
           MG  +N E R+E            K V SDYEPAR                   VS V K
Sbjct: 1   MGTVENMEGREERSTDVERDGKQGKEVESDYEPARDSVSSQGEANSNEDTRAKRVSRVPK 60

Query: 30  KLMRKDTRENSPRMAKSSGSRQVQNKLQHKASNNIQSRSPKPRKVVNAAKSAEVRRSDTV 89
           KL++KD++ENSPR  + + +RQVQ KLQ+ +SNN+QS+SPKP K  + AK+ E+ + DTV
Sbjct: 61  KLVKKDSKENSPRSGRINSNRQVQTKLQYISSNNLQSKSPKPNKTSDGAKTIEITKPDTV 120

Query: 90  RVPSRAPSELSEETDD-----IVS------------------------------------ 108
            VPS   SE+SEE DD     IV+                                    
Sbjct: 121 TVPSCPSSEVSEEMDDKPIENIVTDDKSIEDVADDKATEGTASYDKATEGKAADDTTVED 180

Query: 109 --------EAGTVD--------DSKGNEEAKEIDVLDEAPHCDQSTGTDDEIPEIEEKIV 152
                   E+GT D        D K +EEAKEID+LDEAP+CDQST TD+EI + EE I 
Sbjct: 181 NTTDERSIESGTDDRTIAGIAADVKSSEEAKEIDILDEAPNCDQSTATDEEIADTEESIA 240

Query: 153 DDEKPVVYQRNEELQSKIDKLEQELREVAALEVSLYSVLPEHGSSAHKLHTPARRLSRMY 212
            D K   Y+++EEL+SK ++LEQELREVAALE+SLYSV+PEHG S+HKLHTPARRLSR+Y
Sbjct: 241 YDGKSAAYEKSEELESKCERLEQELREVAALEISLYSVVPEHGCSSHKLHTPARRLSRLY 300

Query: 213 IHASKFWSSDKIASVAKSTVSGLVLVAKSCSNDASRLTFWLSNTVVLREIIAQTIGISCQ 272
           +HASKFWSSDK ASV K+ VSGLVLVAKSC ND SRLTFWLSNTVVLREIIAQT GI+ Q
Sbjct: 301 VHASKFWSSDKKASVTKNFVSGLVLVAKSCGNDVSRLTFWLSNTVVLREIIAQTFGITRQ 360

Query: 273 SSSTITAINMNGSAKSLDGRSMPMLWTNSSSGKQTKFTGMQVPDDWHETSTLLAALEKIE 332
            S  + A + N +AK L   S P    N+ SGK  +     +PDDW ET TL+AALEKIE
Sbjct: 361 PSLAMKAFSTNVNAKMLGKNSSPTRRKNNYSGKHARPAIWPLPDDWRETGTLVAALEKIE 420

Query: 333 SWIFSRIVETVWWQALTPHMQTPVEGSSTPKTGRVLGPSLGDQQQGTFSVNLWKAAFHDA 392
           SWIFSRIVE+VWWQALTPHMQT V+  S+PK G +LGP+LGDQQQG FS++LWK AF DA
Sbjct: 421 SWIFSRIVESVWWQALTPHMQTLVKDISSPKAGSLLGPALGDQQQGNFSIHLWKTAFQDA 480

Query: 393 FNRICPLRAGGHECGCLPVLAKLVMEQCVGRLDVAMFNAILRESASEIPTDPISDPIVDP 452
           F+RICPLRAGGHECGCLPVLAKLVME CV RLDVAMFNA+LRESA+E+P+DPISDPIVD 
Sbjct: 481 FSRICPLRAGGHECGCLPVLAKLVMEHCVARLDVAMFNAVLRESANEVPSDPISDPIVDS 540

Query: 453 KVLPIPAGDLSFGSGAQLKNSIGNWSRWLTDNFGIDADDSEEDGT--DTGSERS-AAESK 509
           +VLPIPAGD SFGSGAQLKNSIGNWSRWL D FG+ A   E+ G   D   +RS AA+  
Sbjct: 541 RVLPIPAGDFSFGSGAQLKNSIGNWSRWLQDKFGMVAAAPEKHGQAGDESDDRSGAADFY 600

Query: 510 SFQLLNELSDLLMLPKDMLIEKSIRKEICPSIGLPLVTRILCNFTPDEFCPDPVPSIVXX 569
           SF+LLNELSDLLMLPKDML+EKSIRKE+CPSIG+PLVTRILCNFTPDEFCP+PVP +V  
Sbjct: 601 SFKLLNELSDLLMLPKDMLLEKSIRKEVCPSIGIPLVTRILCNFTPDEFCPEPVPGMVLE 660

Query: 570 XXXXXXXXXRCTDKSATSAFPCIAAPVVYRPPSLLDVAEKVADTGGNAKLDRRASMVQRR 629
                    R T+K   + FPC+AAPVVY PPS  DVAEKVAD GGNA+ D RASMVQRR
Sbjct: 661 ELNAESLLERFTEKDVITTFPCVAAPVVYCPPSPEDVAEKVADAGGNAEPDLRASMVQRR 720

Query: 630 GYTXXXXXXXXXXXXXXXXXKSAPPLLSKGSAHFTAQRGVSMENARYTFLREVWLER 686
           GYT                 +S+PP    G++  T ++G SM NARY  LREV+  R
Sbjct: 721 GYTSDDDLDDLGNPLASLYDRSSPPSPCNGASRSTTRQGGSMSNARYELLREVYGRR 777



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,354,183
Number of extensions: 996384
Number of successful extensions: 2872
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2868
Number of HSP's successfully gapped: 2
Length of query: 687
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 579
Effective length of database: 11,396,689
Effective search space: 6598682931
Effective search space used: 6598682931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)