Os08g0505200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA-binding arm domain containing protein.
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Os08g0505200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA-binding arm domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.98 | 0.495 | 8.69 | -3.44 | 0.564 | 1.82 | 0.387 | -4.61 | -0.533 | 8.92 | 25.8 | 1266 | -- | -- |
| 124.06 | 0.519 | 8.58 | -2.33 | 0.554 | 1.35 | 0.455 | -- | -0.419 | 8.73 | 22.8 | 2644 | -- | -- |
| 111.31 | 0.491 | 8.7 | -3.41 | 0.579 | 1.84 | -- | -4.54 | -0.568 | 9.09 | 25.48 | 1243 | -- | -- |
| 118.2 | 0.506 | 8.54 | -2.26 | 0.568 | 1.39 | -- | -- | -0.217 | 9.18 | 25.96 | 1245 | -- | -- |
| 127.8 | 0.527 | 8.72 | -3.41 | -- | 1.72 | -- | -4.25 | -0.576 | -- | 25.4 | 1346 | -- | -- |
| 188.15 | 0.643 | 8.53 | -1.85 | 0.504 | -- | 0.623 | -- | -0.163 | 7.25 | -- | -- | -- | -- |
| 189.18 | 0.644 | 8.53 | -1.83 | 0.505 | -- | -- | -- | -0.164 | 7.36 | -- | -- | -- | -- |
| 133.09 | 0.537 | 8.57 | -2.27 | -- | 1.28 | -- | -- | -0.29 | -- | 25.4 | 1357 | -- | -- |
| 241.87 | 0.724 | 8.46 | -- | 0.517 | 0.897 | -- | -- | 0.149 | 8.46 | 28 | 1234 | -- | -- |
| 202.73 | 0.665 | 8.54 | -1.83 | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
| 277.89 | 0.78 | 8.48 | -- | 0.489 | -- | -- | -- | 0.0399 | 7.61 | -- | -- | -- | -- |
| 256.42 | 0.746 | 8.47 | -- | -- | 0.819 | -- | -- | 0.154 | -- | 28.5 | 1283 | -- | -- |
| 290.71 | 0.796 | 8.49 | -- | -- | -- | -- | -- | 0.0465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 11 | 113.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 25 | 113.90 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 38 | 114.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 60 | 114.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 131 | 114.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 148 | 114.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 219 | 115.12 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 253 | 115.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 325 | 117.86 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 326 | 117.87 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 329 | 118.05 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 330 | 118.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 334 | 118.22 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 337 | 118.31 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 338 | 118.32 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 340 | 118.50 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 351 | 118.69 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 355 | 118.83 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 358 | 118.88 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 361 | 118.95 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 364 | 118.99 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 373 | 119.12 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 376 | 119.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 381 | 119.17 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 382 | 119.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 387 | 119.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 396 | 119.41 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 402 | 119.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 8 |
| 407 | 119.51 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 408 | 119.51 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 428 | 119.66 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 429 | 119.67 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 430 | 119.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 452 | 119.78 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 456 | 119.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 465 | 119.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 471 | 119.93 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 478 | 119.96 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 499 | 120.11 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 515 | 120.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 540 | 120.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 565 | 120.41 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 574 | 120.47 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 576 | 120.48 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 658 | 120.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 669 | 120.88 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 689 | 120.92 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 757 | 121.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 22 |
| 762 | 121.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 776 | 121.27 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 782 | 121.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 788 | 121.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 802 | 121.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 899 | 121.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 904 | 121.63 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 910 | 121.63 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 923 | 121.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 934 | 121.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 945 | 121.70 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 951 | 121.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 964 | 121.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 977 | 121.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 984 | 121.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 997 | 121.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 23 |