BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0504400 Os08g0504400|AK069190
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0504400  Similar to Uncharacterized enzyme involved in ...   568   e-162

>Os08g0504400 Similar to Uncharacterized enzyme involved in pigment biosynthesis
          Length = 304

 Score =  568 bits (1463), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/295 (94%), Positives = 279/295 (94%)

Query: 10  TGPMGVAVSPXXXXXXXXXXXXXXXXSTIICHGMPYPKNLQTAMEVEAVVRENGAVPATI 69
           TGPMGVAVSP                STIICHGMPYPKNLQTAMEVEAVVRENGAVPATI
Sbjct: 10  TGPMGVAVSPEVEAALARGGAVVALESTIICHGMPYPKNLQTAMEVEAVVRENGAVPATI 69

Query: 70  AILNGVPHVGLSGEQLKSLAVSGRQFQKTARRDIAHVVASGGNGATTVSATMFFAHKVGI 129
           AILNGVPHVGLSGEQLKSLAVSGRQFQKTARRDIAHVVASGGNGATTVSATMFFAHKVGI
Sbjct: 70  AILNGVPHVGLSGEQLKSLAVSGRQFQKTARRDIAHVVASGGNGATTVSATMFFAHKVGI 129

Query: 130 PIFVTGGIGGVHRNGEQTMDISSDLTELGKTPVTVISAGVKSILDIPRTLEYLETQGVTV 189
           PIFVTGGIGGVHRNGEQTMDISSDLTELGKTPVTVISAGVKSILDIPRTLEYLETQGVTV
Sbjct: 130 PIFVTGGIGGVHRNGEQTMDISSDLTELGKTPVTVISAGVKSILDIPRTLEYLETQGVTV 189

Query: 190 AAYKTNEFPAFFTEVSGCKVPCRVDSPEECAKIIYANKNLHLGSGILIAVPIPKEHAASG 249
           AAYKTNEFPAFFTEVSGCKVPCRVDSPEECAKIIYANKNLHLGSGILIAVPIPKEHAASG
Sbjct: 190 AAYKTNEFPAFFTEVSGCKVPCRVDSPEECAKIIYANKNLHLGSGILIAVPIPKEHAASG 249

Query: 250 NAIESAIQKALKEAEDKNIIGNAITPFMLDRVKVLTGRSSLEANCACKEQCSCWC 304
           NAIESAIQKALKEAEDKNIIGNAITPFMLDRVKVLTGRSSLEANCACKEQCSCWC
Sbjct: 250 NAIESAIQKALKEAEDKNIIGNAITPFMLDRVKVLTGRSSLEANCACKEQCSCWC 304



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,406,084
Number of extensions: 391883
Number of successful extensions: 1054
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)