Os08g0504400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uncharacterized enzyme involved in pigment biosynthesis.
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Os08g0504400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uncharacterized enzyme involved in pigment biosynthesis.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.76 | 0.187 | 10.5 | -0.786 | 0.548 | -1.05 | -0.6 | 1.3 | -0.105 | 0.0366 | 27.27 | 223 | -- | -- |
| 17.72 | 0.196 | 10.4 | -0.551 | 0.545 | -1.11 | -0.389 | -- | -0.0517 | 23.8 | 26.46 | 219 | -- | -- |
| 17.19 | 0.193 | 10.5 | -0.745 | 0.528 | -1.05 | -- | 1.15 | -0.102 | 23.8 | 26.9 | 241 | -- | -- |
| 18.36 | 0.2 | 10.4 | -0.535 | 0.552 | -1.11 | -- | -- | -0.0505 | 23.9 | 26.58 | 216 | -- | -- |
| 23.21 | 0.224 | 10.5 | -0.882 | -- | -1.11 | -- | 1.57 | -0.113 | -- | 28.24 | 721 | -- | -- |
| 35.39 | 0.279 | 10.4 | -0.264 | 0.475 | -- | -0.445 | -- | 0.194 | 22 | -- | -- | -- | -- |
| 36.17 | 0.282 | 10.4 | -0.246 | 0.477 | -- | -- | -- | 0.195 | 22 | -- | -- | -- | -- |
| 26.3 | 0.239 | 10.4 | -0.58 | -- | -1.19 | -- | -- | -0.0679 | -- | 26.6 | 737 | -- | -- |
| 25.05 | 0.233 | 10.4 | -- | 0.535 | -0.887 | -- | -- | 0.053 | 23.4 | 26.45 | 192 | -- | -- |
| 49.9 | 0.33 | 10.4 | -0.24 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 37.77 | 0.287 | 10.4 | -- | 0.477 | -- | -- | -- | 0.223 | 22 | -- | -- | -- | -- |
| 34.11 | 0.272 | 10.4 | -- | -- | -0.955 | -- | -- | 0.0404 | -- | 26.6 | 707 | -- | -- |
| 51.42 | 0.335 | 10.4 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.26 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 9 | 16.68 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 12 | 16.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 14 | 16.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 16.89 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 17 | 16.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 24 | 16.96 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 51 | 17.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 52 | 17.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 62 | 17.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 73 | 17.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 129 | 17.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 184 | 18.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 197 | 18.28 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 291 | 18.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 318 | 18.74 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 364 | 18.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 365 | 18.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 372 | 18.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 377 | 18.93 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 562 | 19.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 725 | 19.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 788 | 19.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 851 | 19.65 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 903 | 19.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 989 | 19.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |