BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0503600 Os08g0503600|AK119300
         (329 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0503600  Conserved hypothetical protein                      270   8e-73

>Os08g0503600 Conserved hypothetical protein
          Length = 329

 Score =  270 bits (691), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 170/329 (51%)

Query: 1   AEGDGPLLREVGRPHPHQDDVXXXXXXXXXXXXXXXXXXXXXXXFGESPHLLPAAVVDVA 60
           AEGDGPLLREVGRPHPHQDDV                       FGESPHLLPAAVVDVA
Sbjct: 1   AEGDGPLLREVGRPHPHQDDVHAGAGQRRHAADRRRVHHAEHHRFGESPHLLPAAVVDVA 60

Query: 61  AGEPLQXXXXXXXXXXXXXXXXXXXADERGRAGDAEEQQRRPHRIAAEEGQHXXXXXXXX 120
           AGEPLQ                   ADERGRAGDAEEQQRRPHRIAAEEGQH        
Sbjct: 61  AGEPLQDPRRHRHHHDRARRVVDPHADERGRAGDAEEQQRRPHRIAAEEGQHVEGEAAVD 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPEEH 180
                                HV                                PPEEH
Sbjct: 121 AVVVDGEGEDEAAEDEGDDVAHVRPGDVVGGGDPQGREEEQRRHGRDGERHGAGDPPEEH 180

Query: 181 PRQHAQHVPRLAVPVPEVHGGAHXXXXXXXXXXXXXXXXEQSAHPXXXXXXXXTSTITLX 240
           PRQHAQHVPRLAVPVPEVHGGAH                EQSAHP        TSTITL 
Sbjct: 181 PRQHAQHVPRLAVPVPEVHGGAHRRARRRPRRDRRVLVREQSAHPRRRRRRRRTSTITLR 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELMDRSPPPPWLASARLVSAGFIAARAT 300
                                          DELMDRSPPPPWLASARLVSAGFIAARAT
Sbjct: 241 HRPAPRRRQQQRRLHVVRRALAVAAAVLVHADELMDRSPPPPWLASARLVSAGFIAARAT 300

Query: 301 LKMDGEVIWPSLNSPEKYAKISKIDDKNI 329
           LKMDGEVIWPSLNSPEKYAKISKIDDKNI
Sbjct: 301 LKMDGEVIWPSLNSPEKYAKISKIDDKNI 329



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,339,518
Number of extensions: 198015
Number of successful extensions: 459
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)