Os08g0503600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0503600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284.9 | 0.793 | 4.98 | -0.12 | 2.31 | 3.04 | -0.192 | -0.583 | 0.0293 | 5.06 | 7.551 | 100 | 4.02 | 15.6 |
| 285.48 | 0.787 | 4.98 | -0.0616 | 2.29 | 2.98 | 0.0225 | -- | 0.0468 | 5.1 | 6.995 | 100 | 4.02 | 15.6 |
| 284.96 | 0.786 | 4.98 | -0.112 | 2.31 | 3.04 | -- | -0.519 | 0.0344 | 5.04 | 7.342 | 100 | 4.02 | 15.6 |
| 285.46 | 0.787 | 4.98 | -0.0586 | 2.3 | 3 | -- | -- | 0.0492 | 5.05 | 6.732 | 99 | 4.02 | 15.6 |
| 416.13 | 0.95 | 5.03 | 0.236 | -- | 2.16 | -- | 0.733 | 0.113 | -- | 0.4178 | 53 | 3.83 | 13.7 |
| 400.09 | 0.938 | 4.9 | 0.311 | 2.22 | -- | 0.294 | -- | 0.29 | 9.3 | -- | -- | -- | -- |
| 400.4 | 0.937 | 4.9 | 0.322 | 2.21 | -- | -- | -- | 0.29 | 9.29 | -- | -- | -- | -- |
| 407.96 | 0.941 | 4.99 | 0.154 | -- | 2.11 | -- | -- | 0.157 | -- | -3.896 | 92 | 3.32 | 14.1 |
| 285.55 | 0.787 | 4.97 | -- | 2.3 | 3 | -- | -- | 0.0571 | 5.04 | 6.634 | 99 | 4.02 | 15.6 |
| 686.2 | 1.22 | 4.96 | 0.312 | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
| 403.13 | 0.939 | 4.91 | -- | 2.21 | -- | -- | -- | 0.255 | 9.28 | -- | -- | -- | -- |
| 387.7 | 0.917 | 5 | -- | -- | 2.3 | -- | -- | 0.132 | -- | -20.34 | 260 | 1.67 | 13.1 |
| 688.76 | 1.22 | 4.97 | -- | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 288.29 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 2 | 292.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 4 | 294.99 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 21 |
| 10 | 298.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 24 | 300.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 47 | 303.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 57 | 305.63 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 83 | 308.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 148 | 310.52 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 158 | 311.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 184 | 311.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 195 | 312.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 214 | 312.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 221 | 313.04 | wind | 7 | 90 | < th | dose independent | rect. | 4 | 15 |
| 225 | 313.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 243 | 313.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 248 | 313.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 251 | 313.82 | temperature | 15 | 90 | > th | dose independent | rect. | 4 | 15 |
| 292 | 314.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 297 | 314.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 354 | 315.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 15 |
| 397 | 315.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 444 | 316.10 | humidity | 90 | 43200 | > th | dose dependent | sin | 7 | NA |
| 490 | 316.44 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 497 | 316.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 518 | 316.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 528 | 316.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 568 | 316.87 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 624 | 317.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 633 | 317.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 682 | 317.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 738 | 317.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 753 | 317.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 795 | 318.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 800 | 318.10 | humidity | 60 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 816 | 318.18 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 817 | 318.18 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 843 | 318.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 850 | 318.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 854 | 318.38 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 5 |
| 858 | 318.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 873 | 318.49 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 940 | 318.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 944 | 318.78 | wind | 9 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 946 | 318.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 978 | 318.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 5 |