BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0500100 Os08g0500100|AK065120
         (736 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0500100  Similar to Peroxisomal targeting sequence 1 re...  1495   0.0  

>Os08g0500100 Similar to Peroxisomal targeting sequence 1 receptor (Fragment)
          Length = 736

 Score = 1495 bits (3870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/736 (98%), Positives = 722/736 (98%)

Query: 1   MAMRHLITGQGNCAPDGASSSNPFGNLANAIFGQSSKAQSIKELPGSAVNVPTTSELGTA 60
           MAMRHLITGQGNCAPDGASSSNPFGNLANAIFGQSSKAQSIKELPGSAVNVPTTSELGTA
Sbjct: 1   MAMRHLITGQGNCAPDGASSSNPFGNLANAIFGQSSKAQSIKELPGSAVNVPTTSELGTA 60

Query: 61  APLSTIPGSENEFKQDQLPLARGADFIRGGPSHDWVESFRPPGLPEFAVPDAQLKEFEQI 120
           APLSTIPGSENEFKQDQLPLARGADFIRGGPSHDWVESFRPPGLPEFAVPDAQLKEFEQI
Sbjct: 61  APLSTIPGSENEFKQDQLPLARGADFIRGGPSHDWVESFRPPGLPEFAVPDAQLKEFEQI 120

Query: 121 FNSTGPTFGPPVMDGPPQRVLSGVLRSFLASGQAGVPFQPVPVPALGLSESDKQCIRDRS 180
           FNSTGPTFGPPVMDGPPQRVLSGVLRSFLASGQAGVPFQPVPVPALGLSESDKQCIRDRS
Sbjct: 121 FNSTGPTFGPPVMDGPPQRVLSGVLRSFLASGQAGVPFQPVPVPALGLSESDKQCIRDRS 180

Query: 181 CIMARHILADQPEEYIQAQVNTLLHSLDIDSNYRMKGPMHGPYPEMEEYWNQSQSAMRSG 240
           CIMARHILADQPEEYIQAQVNTLLHSLDIDSNYRMKGPMHGPYPEMEEYWNQSQSAMRSG
Sbjct: 181 CIMARHILADQPEEYIQAQVNTLLHSLDIDSNYRMKGPMHGPYPEMEEYWNQSQSAMRSG 240

Query: 241 PMHNAADKWITEFGKQNNNPEEWAHSFEQQYGSNGWASEFEQHQSQMAMTGGMNMANLAA 300
           PMHNAADKWITEFGKQNNNPEEWAHSFEQQYGSNGWASEFEQHQSQMAMTGGMNMANLAA
Sbjct: 241 PMHNAADKWITEFGKQNNNPEEWAHSFEQQYGSNGWASEFEQHQSQMAMTGGMNMANLAA 300

Query: 301 MEQSRMLAQTLASNNDPKFQNSKFFQFVSKMSRGELIIEDNQVKQGSASQSSGWADEFQT 360
           MEQSRMLAQTLASNNDPKFQNSKFFQFVSKMSRGELIIEDNQVKQGSASQSSGWADEFQT
Sbjct: 301 MEQSRMLAQTLASNNDPKFQNSKFFQFVSKMSRGELIIEDNQVKQGSASQSSGWADEFQT 360

Query: 361 QYNANANSWADQFVHEEMSQGADKWASEFSTEYNQGGLNENWIDEFSKMRVDDEWAEEFS 420
           QYNANANSWADQFVHEEMSQGADKWASEFSTEYNQGGLNENWIDEFSKMRVDDEWAEEFS
Sbjct: 361 QYNANANSWADQFVHEEMSQGADKWASEFSTEYNQGGLNENWIDEFSKMRVDDEWAEEFS 420

Query: 421 GGTFGESSADPWVDEFQNQLSASKQNSGASRGVYVFSDMNPYVGHPNPMQEGQELFRKGX 480
           GGTFGESSADPWVDEFQNQLSASKQNSGASRGVYVFSDMNPYVGHPNPMQEGQELFRKG 
Sbjct: 421 GGTFGESSADPWVDEFQNQLSASKQNSGASRGVYVFSDMNPYVGHPNPMQEGQELFRKGL 480

Query: 481 XXXXXXXXXXXXXKNPDNAEGWRLLGVTHAENDDDQQAIAAMMRAQEADPTNLEVLLALG 540
                        KNPDNAEGWRLLGVTHAENDDDQQAIAAMMRAQEADPTNLEVLLALG
Sbjct: 481 LSEAVLALEAEVLKNPDNAEGWRLLGVTHAENDDDQQAIAAMMRAQEADPTNLEVLLALG 540

Query: 541 VSHTNELEQGEALRYLHRWLQNHPKYGGIAPPQPTDSPYGPDVIRLFNEAAQMSPEDADV 600
           VSHTNELEQGEALRYLHRWLQNHPKYGGIAPPQPTDSPYGPDVIRLFNEAAQMSPEDADV
Sbjct: 541 VSHTNELEQGEALRYLHRWLQNHPKYGGIAPPQPTDSPYGPDVIRLFNEAAQMSPEDADV 600

Query: 601 HIVLGVLYNLSREYDKAIAAFKTALQLKPQDYSLWNKLGATQANSIQSADAILAYQQALD 660
           HIVLGVLYNLSREYDKAIAAFKTALQLKPQDYSLWNKLGATQANSIQSADAILAYQQALD
Sbjct: 601 HIVLGVLYNLSREYDKAIAAFKTALQLKPQDYSLWNKLGATQANSIQSADAILAYQQALD 660

Query: 661 LKPNYVRAWANMGISYANQGLYEDSIRYYVRAVAMNPKADNAWQYLRISLSNASRADMIA 720
           LKPNYVRAWANMGISYANQGLYEDSIRYYVRAVAMNPKADNAWQYLRISLSNASRADMIA
Sbjct: 661 LKPNYVRAWANMGISYANQGLYEDSIRYYVRAVAMNPKADNAWQYLRISLSNASRADMIA 720

Query: 721 ACDSRNLDVLQKEFPL 736
           ACDSRNLDVLQKEFPL
Sbjct: 721 ACDSRNLDVLQKEFPL 736



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,801,484
Number of extensions: 1196797
Number of successful extensions: 2628
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2611
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 628
Effective length of database: 11,396,689
Effective search space: 7157120692
Effective search space used: 7157120692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)