BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0500000 Os08g0500000|AK058215
         (329 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0500000  Similar to COP9 signalosome complex subunit 6a...   587   e-168
Os12g0622900  Mov34/MPN/PAD-1 family protein                      184   6e-47
Os10g0506300                                                       89   6e-18

>Os08g0500000 Similar to COP9 signalosome complex subunit 6a (Signalosome subunit
           6a) (Fragments)
          Length = 329

 Score =  587 bits (1514), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/329 (87%), Positives = 287/329 (87%)

Query: 1   MSAPSDPAVATHPQXXXXXXXXXXXXLTFKLHPLVIVNVSDHHTRVKXXXXXXXXXXXXX 60
           MSAPSDPAVATHPQ            LTFKLHPLVIVNVSDHHTRVK             
Sbjct: 1   MSAPSDPAVATHPQAGAAAAASSSSGLTFKLHPLVIVNVSDHHTRVKAQAACSGDGASSA 60

Query: 61  XXXXQPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYV 120
               QPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYV
Sbjct: 61  AAGGQPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYV 120

Query: 121 LGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSP 180
           LGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSP
Sbjct: 121 LGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSP 180

Query: 181 QLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVI 240
           QLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVI
Sbjct: 181 QLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVI 240

Query: 241 HQYLVSMQKGDMPLDNXXXXXXXXXXXXXPAMESEKFQDDFLMEYNDTLLMTYLAMFTNC 300
           HQYLVSMQKGDMPLDN             PAMESEKFQDDFLMEYNDTLLMTYLAMFTNC
Sbjct: 241 HQYLVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNC 300

Query: 301 SSTMNELVEKFNATYERSTARRGGRGAFM 329
           SSTMNELVEKFNATYERSTARRGGRGAFM
Sbjct: 301 SSTMNELVEKFNATYERSTARRGGRGAFM 329



>Os12g0622900 Mov34/MPN/PAD-1 family protein
          Length = 499

 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 122/194 (62%), Gaps = 20/194 (10%)

Query: 27  LTFKLHPLVIVNVSDHHTRVKXXXXXXXXXXXXXXXXXQPPRVFGCVIGVQRGRTVEIFN 86
           LTF+LHPL ++ +S H  R                   Q  R+ GCVIGV+RG TV+I +
Sbjct: 16  LTFRLHPLAVLKLS-HRIR---------EFVHLHDDQYQQARMSGCVIGVRRGGTVDISD 65

Query: 87  SFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTD----------MQ 136
           +F+++ DP  GT DRA LEK QE+YKK FPD  VLGWYS G++V  TD          MQ
Sbjct: 66  TFDILHDPDPGTFDRALLEKDQEIYKKAFPDLSVLGWYSIGTNVHATDTGIHHGDYTDMQ 125

Query: 137 IHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTIETVEA 196
           IH+ LMD N +  YLLLNPAIN S KD+PVTIYE  L   DGSP + FV+ NYT+E V A
Sbjct: 126 IHQTLMDANGTAFYLLLNPAINFSHKDIPVTIYERVLCNSDGSPPVSFVQGNYTVEIVGA 185

Query: 197 ERISVDHVAHLKPS 210
           ERIS+DH   L PS
Sbjct: 186 ERISLDHADFLYPS 199



>Os10g0506300 
          Length = 156

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 14/128 (10%)

Query: 27  LTFKLHPLVIVNVSD-----HHTRVKXXXXXXXXXXXXXXXXXQPP-------RVFGCVI 74
           LTF+LHPL ++ +SD      +                      P        R+ GCVI
Sbjct: 16  LTFRLHPLAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMSGCVI 75

Query: 75  GVQRGRTVEIFNSFELVL--DPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRD 132
           GV+RG TV++ +  ++++   P   T DRA LEK QE+YKK FPD  VLGWYS G++V  
Sbjct: 76  GVRRGGTVDVSDILDILILHGPDPATFDRALLEKDQEIYKKAFPDLSVLGWYSIGTNVHA 135

Query: 133 TDMQIHKA 140
           TDM IH  
Sbjct: 136 TDMGIHHG 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,400,074
Number of extensions: 331365
Number of successful extensions: 720
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 3
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)