BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0494000 Os08g0494000|AK110788
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0494000 Harpin-induced 1 domain containing protein 394 e-110
Os01g0909000 77 9e-15
>Os08g0494000 Harpin-induced 1 domain containing protein
Length = 232
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/232 (84%), Positives = 197/232 (84%)
Query: 1 MATPYHVQSPRSILLKMIATKXXXXXXXXXXXXXXXXXXRQRTSPAMWCAAIVCFAFSXX 60
MATPYHVQSPRSILLKMIATK RQRTSPAMWCAAIVCFAFS
Sbjct: 1 MATPYHVQSPRSILLKMIATKQQPPALPPPPPPKLILQPRQRTSPAMWCAAIVCFAFSLL 60
Query: 61 XXXXXXXXXXXXXXXRPRAPSFDAAGATLNAVYVGSTSPAPYVNGDMTVAANVSNPNQKM 120
RPRAPSFDAAGATLNAVYVGSTSPAPYVNGDMTVAANVSNPNQKM
Sbjct: 61 LIAAGAVILVVFLAVRPRAPSFDAAGATLNAVYVGSTSPAPYVNGDMTVAANVSNPNQKM 120
Query: 121 DVVFRSAAVELFFGGRRMAAQALPAPFVQRRGQSQIISVHMVSSQVALPPELAVAMVNQV 180
DVVFRSAAVELFFGGRRMAAQALPAPFVQRRGQSQIISVHMVSSQVALPPELAVAMVNQV
Sbjct: 121 DVVFRSAAVELFFGGRRMAAQALPAPFVQRRGQSQIISVHMVSSQVALPPELAVAMVNQV 180
Query: 181 RSNRVVYTIRGTFKVQAKLWFWHYTYSMSALCDLELTAPPCGVLVARRCITR 232
RSNRVVYTIRGTFKVQAKLWFWHYTYSMSALCDLELTAPPCGVLVARRCITR
Sbjct: 181 RSNRVVYTIRGTFKVQAKLWFWHYTYSMSALCDLELTAPPCGVLVARRCITR 232
>Os01g0909000
Length = 455
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 77 PRAPSFDAAGATLNAVYV---GSTSPAPYVNGDMTVAANVSNPNQKMDVVFRSAAVELFF 133
P++P ATLNA YV G A +N D+TV A + NPN K+ VV R ++L+F
Sbjct: 296 PQSPRMRVTSATLNAGYVDELGIVGGARALNADLTVLAAIYNPNTKLHVVLRYMQLDLYF 355
Query: 134 GGRRMAAQAL-PAPFVQRRGQSQIISVHMVSSQVALPPELAVAMVNQV-RSNRVVYTIRG 191
G + QA+ PAP + S + SVH+V S+V + E N + VV + G
Sbjct: 356 QGSMIGTQAVWPAPLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKGGPVVLHLAG 415
Query: 192 TFKVQAKLWFW-HYTYSMSALCDLELTAPPCGVLVARRC 229
F+ + W + Y +S C L L PP G L RC
Sbjct: 416 RFRARLIFGRWFKFNYWVSPQCTLWLDPPPSGALRRARC 454
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.131 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,269,174
Number of extensions: 196115
Number of successful extensions: 629
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 3
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)