Os08g0494000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os08g0494000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.89 | 0.472 | 7.29 | -1.28 | 0.928 | 1.49 | 0.301 | -3.7 | -0.0681 | 10.1 | 24.81 | 1148 | -- | -- |
| 106.44 | 0.481 | 7.18 | -0.49 | 0.966 | 1.26 | 0.542 | -- | 0.112 | 10.4 | 24.41 | 1138 | -- | -- |
| 101.21 | 0.469 | 7.29 | -1.31 | 0.941 | 1.51 | -- | -3.91 | -0.0848 | 10 | 24.71 | 1132 | -- | -- |
| 106.68 | 0.481 | 7.18 | -0.347 | 0.936 | 1.09 | -- | -- | 0.168 | 9.93 | 25 | 1129 | -- | -- |
| 145.1 | 0.561 | 7.35 | -1.53 | -- | 1.19 | -- | -3.44 | -0.197 | -- | 22.9 | 2904 | -- | -- |
| 145.19 | 0.565 | 7.15 | -0.0569 | 0.724 | -- | 0.317 | -- | 0.29 | 9.34 | -- | -- | -- | -- |
| 145.54 | 0.565 | 7.15 | -0.0458 | 0.724 | -- | -- | -- | 0.29 | 9.29 | -- | -- | -- | -- |
| 145.03 | 0.561 | 7.21 | -0.554 | -- | 0.991 | -- | -- | 0.08 | -- | 22.57 | 5831 | -- | -- |
| 109.89 | 0.488 | 7.16 | -- | 0.879 | 0.992 | -- | -- | 0.25 | 9.93 | 25.51 | 1144 | -- | -- |
| 176.07 | 0.62 | 7.17 | -0.0491 | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
| 145.6 | 0.564 | 7.15 | -- | 0.724 | -- | -- | -- | 0.295 | 9.29 | -- | -- | -- | -- |
| 148.49 | 0.568 | 7.18 | -- | -- | 0.785 | -- | -- | 0.277 | -- | 26.44 | 5723 | -- | -- |
| 176.14 | 0.619 | 7.17 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 2 | 102.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 3 | 102.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 11 |
| 9 | 103.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 10 | 103.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 11 | 103.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 18 |
| 15 | 103.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 17 | 104.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 18 | 104.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 10 |
| 21 | 104.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 32 | 104.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 35 | 104.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 49 | 104.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 93 | 105.07 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 122 | 105.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 125 | 105.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 176 | 105.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 195 | 105.66 | temperature | 20 | 10 | > th | dose dependent | sin | 13 | NA |
| 217 | 105.71 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 236 | 105.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 269 | 105.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 308 | 105.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 452 | 107.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 463 | 107.06 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 514 | 107.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 536 | 107.57 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 555 | 107.69 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 605 | 107.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 614 | 107.96 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 623 | 108.01 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 642 | 108.10 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 947 | 109.10 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 951 | 109.11 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 977 | 109.14 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 987 | 109.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |