BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0490700 Os08g0490700|AK069034
         (420 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0490700  Conserved hypothetical protein                      460   e-129

>Os08g0490700 Conserved hypothetical protein
          Length = 420

 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/393 (68%), Positives = 269/393 (68%)

Query: 28  KDYXXXXXXXXXXXXXXXXXTPTTGKESVAGKTDVVTVAKKSPAGKADXXXXXXXXXXXX 87
           KDY                 TPTTGKESVAGKTDVVTVAKKSPAGKAD            
Sbjct: 28  KDYPADASAVAKKSPASKADTPTTGKESVAGKTDVVTVAKKSPAGKADTSATYKEYAAAK 87

Query: 88  XXXXXXXXXXPAAKADTPTTSKESXXXXXXXXXXXXXSPAGKADTSATATGKEYAAAKAD 147
                     PAAKADTPTTSKES             SPAGKADTSATATGKEYAAAKAD
Sbjct: 88  ADAVTVTKKSPAAKADTPTTSKESAAGKANAATVAKKSPAGKADTSATATGKEYAAAKAD 147

Query: 148 AITVTKKSPAAKADMPATGKESIAKVDAATVXXXXXXXXXXXXXXXXXFTMSGKTNTEAD 207
           AITVTKKSPAAKADMPATGKESIAKVDAATV                 FTMSGKTNTEAD
Sbjct: 148 AITVTKKSPAAKADMPATGKESIAKVDAATVAKESTAGKTGKKAAAKEFTMSGKTNTEAD 207

Query: 208 AATVAKKSLAGKAGTPATGKEYXXXXXXXXXXXXXSPADKTGKESVVAKADXXXXXXXXX 267
           AATVAKKSLAGKAGTPATGKEY             SPADKTGKESVVAKAD         
Sbjct: 208 AATVAKKSLAGKAGTPATGKEYAVTKADAATVAKKSPADKTGKESVVAKADTATVTKKST 267

Query: 268 XXXXXXXXXXXESPASHKTSMEAATKKSTANKTGTETAAKESTVSGKTDTETAAKESTAP 327
                      ESPASHKTSMEAATKKSTANKTGTETAAKESTVSGKTDTETAAKESTAP
Sbjct: 268 AGKTGKKVAAKESPASHKTSMEAATKKSTANKTGTETAAKESTVSGKTDTETAAKESTAP 327

Query: 328 GKTDTTAAVKESTAGKGDXXXXXXXXXXXXXXXXXXXXXXPTNKADAAAAGPTSGGYQYV 387
           GKTDTTAAVKESTAGKGD                      PTNKADAAAAGPTSGGYQYV
Sbjct: 328 GKTDTTAAVKESTAGKGDAPAMAEKSAAGKAEASAAAKESPTNKADAAAAGPTSGGYQYV 387

Query: 388 NFVIKNPVKAKEKSSDRADGLPIDPTPDGQMMH 420
           NFVIKNPVKAKEKSSDRADGLPIDPTPDGQMMH
Sbjct: 388 NFVIKNPVKAKEKSSDRADGLPIDPTPDGQMMH 420



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.297    0.113    0.296 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,442,027
Number of extensions: 246997
Number of successful extensions: 723
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 317
Effective length of database: 11,657,759
Effective search space: 3695509603
Effective search space used: 3695509603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 157 (65.1 bits)