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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0490700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0353) R2 : 0.492
β1 : 0.754 (0.128) R2dD : 0.0412 R2D : 0.0187
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.15 (0.133) R2dE : 0.343 R2E : 0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.45 (0.575) R2dD*E : 0.335 R2D*E : 0.149
γ1 : 0.0899 (0.0773) R2dN8 : 0.00228 R2N8 : -0.0115
σ : 0.645
deviance : 191.69
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.697
memory length : 4323
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.75 0.645 3.24 0.748 0.14 -2.16 0.738 -9.51 0.0915 15.2 6.7 4323 18.3 3.02
269.65 0.765 3.24 0.775 0.162 -1.87 0.445 -- 0.0892 15.1 7.788 4319 18.3 3.03
190.52 0.643 3.24 0.761 0.14 -2.16 -- -9.44 0.0933 15.2 6.7 4323 18.3 3.02
269.77 0.765 3.24 0.761 0.161 -1.88 -- -- 0.0892 14.4 7.78 4319 18.3 3.05
191.69 0.645 3.24 0.754 -- -2.15 -- -9.45 0.0899 -- 6.697 4323 18.3 3
364.35 0.895 3.2 0.543 0.186 -- 0.664 -- -0.0478 13.8 -- -- -- --
366.07 0.896 3.2 0.564 0.186 -- -- -- -0.0441 13.7 -- -- -- --
271.14 0.767 3.24 0.643 -- -1.85 -- -- 0.0893 -- 7.778 4319 18.3 3.05
276.77 0.775 3.24 -- 0.165 -1.92 -- -- 0.0852 14.3 7.821 4318 18.3 3.03
368.18 0.897 3.2 0.557 -- -- -- -- -0.0482 -- -- -- -- --
374.46 0.905 3.21 -- 0.176 -- -- -- -0.107 13.6 -- -- -- --
239.14 0.72 3.24 -- -- -2.28 -- -- -0.0409 -- 9.2 4319 18.4 3.04
376.36 0.906 3.21 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.86 wind 7 4320 < th dose independent rect. 18 3
6 204.44 wind 5 4320 > th dose dependent rect. 20 3
8 204.57 wind 7 4320 > th dose independent rect. 18 3
15 206.71 humidity 90 1440 < th dose dependent rect. 3 1
20 207.54 wind 7 4320 < th dose independent rect. 18 9
33 209.28 wind 9 4320 > th dose dependent rect. 20 1
144 217.52 humidity 90 1440 < th dose dependent rect. 2 5
148 218.36 humidity 90 1440 < th dose dependent rect. 23 8
152 220.01 atmosphere 995 14400 < th dose independent rect. 17 2
155 220.01 atmosphere 995 14400 < th dose dependent rect. 17 2
176 220.52 atmosphere 995 14400 > th dose independent rect. 16 3
181 221.13 humidity 80 1440 < th dose independent rect. 22 1
248 225.17 atmosphere 995 14400 > th dose independent rect. 10 9
337 227.86 humidity 90 1440 < th dose dependent rect. 5 1
386 231.33 wind 7 1440 > th dose independent rect. 8 1
437 235.12 wind 7 1440 < th dose independent rect. 8 1
497 236.74 humidity 70 1440 > th dose dependent rect. 1 6
528 237.54 atmosphere 995 14400 > th dose independent rect. 19 21
544 237.80 atmosphere 995 14400 > th dose independent sin 22 NA
551 238.00 atmosphere 995 14400 < th dose independent sin 22 NA
552 238.04 humidity 70 1440 > th dose dependent rect. 3 1
562 238.35 atmosphere 995 14400 < th dose dependent sin 23 NA
578 238.57 atmosphere 995 14400 > th dose independent sin 3 NA
615 239.31 atmosphere 995 14400 < th dose independent sin 3 NA
671 240.03 humidity 80 1440 < th dose dependent rect. 22 1
694 240.31 humidity 80 1440 > th dose independent rect. 22 1
723 240.53 humidity 70 1440 > th dose dependent rect. 5 1
755 240.72 temperature 20 1440 > th dose independent rect. 18 1
871 241.32 atmosphere 995 14400 > th dose independent no NA NA
873 241.32 atmosphere 995 14400 > th dose independent rect. 10 23
874 241.32 atmosphere 995 14400 > th dose independent rect. 14 23
875 241.33 atmosphere 995 14400 > th dose independent rect. 12 23
915 241.51 humidity 80 1440 > th dose independent rect. 22 4
973 241.84 radiation 1 14400 < th dose dependent rect. 23 1