BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0488700 Os08g0488700|Os08g0488700
         (166 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0488700  RNA-binding region RNP-1 (RNA recognition moti...   276   4e-75
Os08g0491800                                                      155   1e-38

>Os08g0488700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 166

 Score =  276 bits (707), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/166 (86%), Positives = 144/166 (86%)

Query: 1   MDFRRRKPPKDGRVFVRGLAAGTAGEADLLRHFDRYGVVDEVSIPRVVGEVDSLTGLPAL 60
           MDFRRRKPPKDGRVFVRGLAAGTAGEADLLRHFDRYGVVDEVSIPRVVGEVDSLTGLPAL
Sbjct: 1   MDFRRRKPPKDGRVFVRGLAAGTAGEADLLRHFDRYGVVDEVSIPRVVGEVDSLTGLPAL 60

Query: 61  RFAIVKFGHPEFAGLALNDREQVIDGQMVAIVLRLLLKWEAXXXXXXXXXXXXXXXXXXX 120
           RFAIVKFGHPEFAGLALNDREQVIDGQMVAIVLRLLLKWEA                   
Sbjct: 61  RFAIVKFGHPEFAGLALNDREQVIDGQMVAIVLRLLLKWEALLQVDIVVLRRLQRQVLLV 120

Query: 121 XXXISQPVELGVLQEQSMRKRDDVLQILPRGSSWRDQVRSFGLRDL 166
              ISQPVELGVLQEQSMRKRDDVLQILPRGSSWRDQVRSFGLRDL
Sbjct: 121 RSLISQPVELGVLQEQSMRKRDDVLQILPRGSSWRDQVRSFGLRDL 166



>Os08g0491800 
          Length = 318

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 82/91 (90%), Gaps = 3/91 (3%)

Query: 1  MDFRRRKPPKDGRVFVRGLAAGTAGEADLLRHFDRYGVVDEVSIPRVVGEVDSLTGLPAL 60
          M+FR RKPPKDGRVFVRGLAAGT GEADLLRHFDRYGVVDEVSIP V  E D+LTGLPAL
Sbjct: 1  MNFRPRKPPKDGRVFVRGLAAGT-GEADLLRHFDRYGVVDEVSIPGV--EADTLTGLPAL 57

Query: 61 RFAIVKFGHPEFAGLALNDREQVIDGQMVAI 91
          RFAIVKFGHPEFAGLAL DREQVIDGQ V +
Sbjct: 58 RFAIVKFGHPEFAGLALADREQVIDGQTVHV 88



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.143    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,143,998
Number of extensions: 174525
Number of successful extensions: 507
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 152 (63.2 bits)