Os08g0488700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0488700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.7 | 0.614 | 2.98 | 0.517 | 0.437 | -0.36 | 1.03 | -2.87 | 0.297 | 7.65 | 23.89 | 486 | -- | -- |
| 179.87 | 0.625 | 3.03 | 0.0673 | 0.418 | -0.075 | 0.475 | -- | 0.212 | 7.92 | 26.68 | 2244 | -- | -- |
| 173.17 | 0.613 | 2.99 | 0.477 | 0.44 | -0.314 | -- | -2.54 | 0.286 | 7.65 | 23.55 | 393 | -- | -- |
| 178.34 | 0.622 | 3.02 | 0.162 | 0.397 | 0.548 | -- | -- | 0.225 | 7.62 | 19.1 | 281 | -- | -- |
| 182.75 | 0.63 | 3 | 0.472 | -- | -0.182 | -- | -2.4 | 0.304 | -- | 23.52 | 354 | -- | -- |
| 180.11 | 0.629 | 3.03 | 0.113 | 0.413 | -- | 0.415 | -- | 0.224 | 7.77 | -- | -- | -- | -- |
| 180.6 | 0.629 | 3.03 | 0.124 | 0.413 | -- | -- | -- | 0.224 | 7.76 | -- | -- | -- | -- |
| 186.58 | 0.636 | 3.03 | 0.255 | -- | 0.839 | -- | -- | 0.27 | -- | 19.22 | 355 | -- | -- |
| 179.19 | 0.623 | 3.03 | -- | 0.407 | 0.618 | -- | -- | 0.225 | 7.72 | 18.88 | 342 | -- | -- |
| 189.82 | 0.644 | 3.04 | 0.129 | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
| 181.01 | 0.629 | 3.03 | -- | 0.414 | -- | -- | -- | 0.21 | 7.74 | -- | -- | -- | -- |
| 188.07 | 0.639 | 3.04 | -- | -- | 0.652 | -- | -- | 0.235 | -- | 19.1 | 373 | -- | -- |
| 190.25 | 0.644 | 3.04 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.95 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 3 | 161.29 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 26 | 162.96 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 2 |
| 27 | 162.96 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 36 | 163.23 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 71 | 164.76 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 6 | 8 |
| 101 | 165.62 | temperature | 30 | 10 | > th | dose dependent | rect. | 13 | 22 |
| 126 | 166.40 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 4 | 6 |
| 149 | 166.84 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 0 | NA |
| 164 | 167.18 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 7 | 3 |
| 170 | 167.28 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 172 | 167.32 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 210 | 167.89 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 239 | 168.24 | temperature | 30 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 249 | 168.43 | temperature | 30 | 10 | > th | dose dependent | rect. | 13 | 3 |
| 273 | 168.68 | temperature | 30 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 400 | 169.36 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 421 | 169.49 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 1 |
| 441 | 169.54 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 537 | 170.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 565 | 170.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 569 | 170.32 | atmosphere | 1000 | 270 | < th | dose independent | sin | 2 | NA |
| 582 | 170.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 590 | 170.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 628 | 170.69 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 1 |
| 657 | 170.82 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 664 | 170.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 665 | 170.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 674 | 170.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 714 | 170.94 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 722 | 170.96 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 754 | 170.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 785 | 171.06 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 5 | 4 |
| 812 | 171.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 922 | 171.30 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 988 | 171.41 | temperature | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 990 | 171.41 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 993 | 171.41 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 8 | 3 |